Journal: Quant. Biol.

Volume 7, Issue 4

247 -- 254Jie Zheng, Ke Wang. Emerging deep learning methods for single-cell RNA-seq data analysis
255 -- 265Wazim Mohammed Ismail, Etienne Nzabarushimana, Haixu Tang. Algorithmic approaches to clonal reconstruction in heterogeneous cell populations
266 -- 277Farzane Yahyanejad, Réka Albert, Bhaskar DasGupta. A survey of some tensor analysis techniques for biological systems
278 -- 292Raffaella Rizzi, Stefano Beretta 0001, Murray Patterson, Yuri Pirola, Marco Previtali, Gianluca Della Vedova, Paola Bonizzoni. Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era
293 -- 301Xiaofeng Fu, Yang Yang. WEDeepT3: predicting type III secreted effectors based on word embedding and deep learning
302 -- 312Vijayakumar Subramaniyan, Reetha Sekar, Arulmozhi Praveenkumar, Rajalakshmi Selvam. Molecular modeling studies of repandusinic acid as potent small molecule for hepatitis B virus through molecular docking and ADME analysis
313 -- 326Zongliang Yue, Thanh Nguyen 0005, Eric Zhang, Jianyi Zhang, Jake Y. Chen. WIPER: Weighted in-Path Edge Ranking for biomolecular association networks
327 -- 334Hao Feng, Hao Wu. Differential methylation analysis for bisulfite sequencing using DSS
335 -- 337Feng Liu, Yihan Lin, Chunmei Li, Miaomiao Tian. Quantitative Biology 2019: Dynamic Signaling in Cells and Embryos

Volume 7, Issue 3

171 -- 181Zhixin Ma, Pan M. Chu, Yingtong Su, Yue Yu, Hui-Wen, Xiongfei Fu, Shuqiang Huang. Applications of single-cell technology on bacterial analysis
182 -- 189Shichao Pang, Junchen Yang, Yilei Zhao, Yixue Li, Jingfang Wang. Computational prediction and functional analysis of arsenic-binding proteins in human cells
190 -- 201GuoJun Liu, Mikhail A. Bolkov, Irina A. Tuzankina, Irina G. Danilova. Identification of candidate disease genes in patients with common variable immunodeficiency
202 -- 209Qingfeng Chen, Zhao Zhe, Wei Lan, Ruchang Zhang, Zhiqiang Wang, Cheng Luo, Yi-Ping Pheobe Chen. Identifying MiRNA-disease association based on integrating miRNA topological similarity and functional similarity
210 -- 232Yang Yang, Qi Li, Zhaoyang Liu, Fang Ye, Ke Deng. Understanding traditional Chinese medicine via statistical learning of expert-specific Electronic Medical Records
233 -- 243Shaoming Song, Hongfei Cui, Shengquan Chen, Qiao Liu, Rui Jiang 0001. EpiFIT: functional interpretation of transcription factors based on combination of sequence and epigenetic information
244 -- 246Yinqing Li, Miaomiao Tian. 2019 China Symposium on Single-Cell Genomics

Volume 7, Issue 2

83 -- 89Jiyu Fan, Ailing Fu, Le Zhang. Progress in molecular docking
90 -- 109Xingyu Liao, Min Li 0007, You Zou, Fang-Xiang Wu, Yi Pan 0001, Jianxin Wang. Current challenges and solutions of de novo assembly
110 -- 121Lei Wei, Ye Yuan, Tao Hu, Shuailin Li, Tianrun Cheng, Jinzhi Lei, Zhen Xie, Michael Q. Zhang, Xiaowo Wang. Regulation by competition: a hidden layer of gene regulatory network
122 -- 137Shashank Singh 0005, Yang Yang, Barnabás Póczos, Jian Ma 0004. Predicting enhancer-promoter interaction from genomic sequence with deep neural networks
138 -- 146Tao Ding, Jie Gao, Shanshan Zhu, Junhua Xu, Min Wu. Predicting microRNA-disease association based on microRNA structural and functional similarity network
147 -- 161Chuang Han, Yu Wu. A model of NSCLC microenvironment predicts optimal receptor targets
162 -- 169Kui Hua, Xuegong Zhang. A case study on the detailed reproducibility of a Human Cell Atlas project

Volume 7, Issue 1

1 -- 2Xuegong Zhang. QB: Embracing the future of quantitative understanding and engineering of life
3 -- 16Fuda Xie, Jiangyong Gu. Computational methods and applications for quantitative systems pharmacology
17 -- 29Jing Zhao, Jian Yang, Saisai Tian, Weidong Zhang. A survey of web resources and tools for the study of TCM network pharmacology
30 -- 41Wen Yang, Xia Wang, Kenan Li, Yuanru Liu, Ying Liu, Rui Wang, Honglin Li. Pharmacodynamics simulation of HOEC by a computational model of arachidonic acid metabolic network
42 -- 53Xinzhe Xiao, Zehui Chen, Zengrui Wu, Tianduanyi Wang, Weihua Li 0005, Guixia Liu, Bo Zhang, Yun Tang. Insights into the antineoplastic mechanism of Chelidonium majus via systems pharmacology approach
54 -- 68Lijie Hao, Zhuoqin Yang, Marc Turcotte. Time-scale separation and stochasticity conspire to impact phenotypic dynamics in the canonical and inverted Bacillus subtilis core genetic regulation circuits
69 -- 81Samuel F. M. Hart, David Skelding, Adam James Waite, Justin Burton, Wenying Shou. High-throughput quantification of microbial birth and death dynamics using fluorescence microscopy