Journal: R J.

Volume 13, Issue 2

6 -- 0Daniel Osório 0004, Kelly Botero, Andrés Pinzón Velasco, Nicolás Mendoza-Mejía, Felipe Rojas-Rodríguez, George E. Barreto, Janneth González. g2f as a Novel Tool to Find and Fill Gaps in Metabolic Networks
15 -- 0Håkon Otneim. lg: An R package for Local Gaussian Approximations
18 -- 0Ran Xu. Estimating Social Influence Effects in Networks Using A Latent Space Adjusted Approach in R
22 -- 0Gustavo Soutinho, Marta Sestelo, Luís Meira-Machado. survidm: An R package for Inference and Prediction in an Illness-Death Model
25 -- 0Jingchen Hu, Olanrewaju Akande, Quanli Wang. Multiple Imputation and Synthetic Data Generation with NPBayesImputeCat
28 -- 0Novia Permatasari, Azka Ubaidillah. msae: An R Package of Multivariate Fay-Herriot Models for Small Area Estimation
38 -- 0Javier Rodríguez-Cuadrado, Juan C. Laria, David Delgado-Gómez. cat.dt: An R package for fast construction of accurate Computerized Adaptive Tests using Decision Trees
57 -- 0Andrés Ramírez-Hassan, Mateo Graciano-Londoño. A GUIded tour of Bayesian regression
70 -- 0Sébastien Wouters, Anne-Christine Da Silva, Frédéric Boulvain, Xavier Devleeschouwer. StratigrapheR: Concepts for Litholog Generation in R
90 -- 0Rachid Boumaza, Pierre Santagostini, Smail Yousfi, Sabine Demotes-Mainard. dad: an R Package for Visualisation, Classification and Discrimination of Multivariate Groups Modelled by their Densities
111 -- 0Thiago Rezende Dos Santos, Glaura C. Franco, Dani Gamerman. NGSSEML: Non-Gaussian State Space with Exact Marginal Likelihood
123 -- 0Jinhui Yang, Lifeng Lin, Haitao Chu. BayesSenMC: an R package for Bayesian Sensitivity Analysis of Misclassification
135 -- 0Shaobo Li, Xiaorui Zhu, Yuejie Chen, Dungang Liu. PAsso: an R Package for Assessing Partial Association between Ordinal Variables
153 -- 0Kazushi Maruo, Ryota Ishii, Yusuke Yamaguchi, Masahiko Gosho. bcmixed: A Package for Median Inference on Longitudinal Data with the Box-Cox Transformation
179 -- 0Andrew G. Allmon, J. S. Marron, Michael G. Hudgens. diproperm: An R Package for the DiProPerm Test
208 -- 0Henrik Bengtsson. A Unifying Framework for Parallel and Distributed Processing in R using Futures
228 -- 0Farhad Pishgar, Noah Greifer, Clémence Leyrat, Elizabeth A. Stuart. MatchThem: : Matching and Weighting after Multiple Imputation
239 -- 0Kexuan Yang, Sang Kyu Lee, Jun Zhao, Hyoung-Moon Kim. EMSS: New EM-type algorithms for the Heckman selection model in R
253 -- 0Darío Ramos-López, Ana D. Maldonado. Analysis of Corneal Data in R with the rPACI Package
266 -- 0António Pedro Duarte Silva, Paula Brito, Peter Filzmoser, José G. Dias. MAINT.Data: Modelling and Analysing Interval Data in R
273 -- 0Viviane Philipps, Boris P. Hejblum, Mélanie Prague, Daniel Commenges, Cécile Proust-Lima. Robust and Efficient Optimization Using a Marquardt-Levenberg Algorithm with R Package marqLevAlg
292 -- 0Álvaro Briz-Redón, Francisco Martinez-Ruiz, Francisco Montes. DRHotNet: An R package for detecting differential risk hotspots on a linear network
306 -- 0Bálint Tamási, Torsten Hothorn. tramME: Mixed-Effects Transformation Models Using Template Model Builder
321 -- 0David Moriña, Gilma Hernández-Herrera, Albert Navarro. miRecSurv Package: Prentice-Williams-Peterson Models with Multiple Imputation of Unknown Number of Previous Episodes
336 -- 0Zhixin Lun, Ravindra Khattree. An R package for Non-Normal Multivariate Distributions: Simulation and Probability Calculations from Multivariate Lomax (Pareto Type II) and Other Related Distributions
365 -- 0Tony Pourmohamad. CompModels: A Suite of Computer Model Test Functions for Bayesian Optimization
380 -- 0Sebastian Juhl. spfilteR: An R package for Semiparametric Spatial Filtering with Eigenvectors in (Generalized) Linear Models
398 -- 0Tianhai Zu, Yan Yu. SIQR: An R Package for Single-index Quantile Regression
419 -- 0Yuliang Xu, Shuo Shuo Liu, Grace Y. Yi. mgee2: An R package for marginal analysis of longitudinal ordinal data with misclassified responses and covariates
427 -- 0Rolf Turner. A New Versatile Discrete Distribution
441 -- 0Ali Sabri Taylan, Güçkan Yapar, Hanife Taylan Selamlar. Automatic Time Series Forecasting with Ata Method in R: ATAforecasting Package
450 -- 0Jinpu Li, Ryan P. Knigge, Kaiyi Chen, Emily V. Leary. PASSED: Calculate Power and Sample Size for Two Sample Tests
460 -- 0Jeremy Gelb. spNetwork: A Package for Network Kernel Density Estimation
471 -- 0Jouni Helske, Matti Vihola. bssm: Bayesian Inference of Non-linear and Non-Gaussian State Space Models in R
485 -- 0Rafael Ayala, Daniel Ayala 0001, Lara Sellés Vidal, David Ruiz 0001. openSkies - Integration of Aviation Data into the R Ecosystem
507 -- 0Jean-Paul Fox, Konrad Klotzke, Duco Veen. Generalized Linear Randomized Response Modeling using GLMMRR
542 -- 0H. Sherry Zhang, Dianne Cook, Ursula Laa, Nicolas Langrené, Patricia Menéndez. Visual Diagnostics for Constrained Optimisation with Application to Guided Tours
561 -- 0Apostolos Chalkis, Vissarion Fisikopoulos. volesti: Volume Approximation and Sampling for Convex Polytopes in R
578 -- 0Sladana Babic, Christophe Ley, Marko Palangetic. Elliptical Symmetry Tests in R
590 -- 0Adrian E. Raftery, Hana Sevcikova, Bernard W. Silverman. The vote Package: Single Transferable Vote and Other Electoral Systems in R
600 -- 0Melina C. Vidoni. Software Engineering and R Programming: A Call for Research
624 -- 0Anthony-Alexander Christidis, R. Douglas Martin. RPESE: Risk and Performance Estimators Standard Errors with Serially Dependent Data
642 -- 0Gamze Güven, Sükrü Acitas, Hatice Samkar, Birdal Senoglu. RobustBF: An R Package for Robust Solution to the Behrens-Fisher Problem
661 -- 0William Michael Landau. We Need Trustworthy R Packages
673 -- 0Maëlle Salmon, Karthik Ram. The R Developer Community Does Have a Strong Software Engineering Culture
697 -- 0Simon Urbanek. The R Quest: from Users to Developers
713 -- 0Melina C. Vidoni. Rejoinder: Software Engineering and R Programming

Volume 13, Issue 1

7 -- 0Boyoung Kim, Yunju Im, Keun Yoo Jae. SEEDCCA: An Integrated R-Package for Canonical Correlation Analysis and Partial Least Squares
21 -- 0Ana López-Cheda, M. Amalia Jácome, Ignacio López-de-Ullibarri. npcure: An R Package for Nonparametric Inference in Mixture Cure Models
42 -- 0Mark P. J. van der Loo. A Method for Deriving Information from Running R Code
53 -- 0Hong Wang, Ning Li, Shanpeng Li, Gang Li. JMcmprsk: An R Package for Joint Modelling of Longitudinal and Survival Data with Competing Risks
69 -- 0Toby Dylan Hocking. Wide-to-tall Data Reshaping Using Regular Expressions and the nc Package
83 -- 0Emmanuel Caron, Jérôme Dedecker, Bertrand Michel. Linear Regression with Stationary Errors: the R Package slm
101 -- 0Falk Heße, Karina Cucchi, Nura Kawa, Yoram Rubin. exPrior: An R Package for the Formulation of Ex-Situ Priors
116 -- 0Alessandro Beretta, Cédric Heuchenne. penPHcure: Variable Selection in Proportional Hazards Cure Model with Time-Varying Covariates
130 -- 0Miguel Ferreiro-Díaz, Tomás R. Cotos-Yáñez, José Ramon Méndez, David Ruano-Ordás. The bdpar Package: Big Data Pipelining Architecture for R
145 -- 0Moreno I. Coco, Dan Mønster, Giuseppe Leonardi, Rick Dale, Sebastian Wallot. Unidimensional and Multidimensional Methods for Recurrence Quantification Analysis with crqa
164 -- 0Nora M. Villanueva, Marta Sestelo, Luís Meira-Machado, Javier Roca-Pardiñas. clustcurv: An R Package for Determining Groups in Multiple Curves
184 -- 0Eashwar V. Somasundaram, Shael E. Brown, Adam Litzler, Jacob G. Scott, Raoul R. Wadhwa. Benchmarking R packages for Calculation of Persistent Homology
194 -- 0Miguel Flores, Rubén Fernández-Casal, Salvador Naya, Javier Tarrío-Saavedra. Statistical Quality Control with the qcr Package
218 -- 0Markus Fritsch, Adrian Yu Pua Andrew, Joachim Schnurbus. pdynmc: A Package for Estimating Linear Dynamic Panel Data Models Based on Nonlinear Moment Conditions
232 -- 0Julio E. Sandubete, Lorenzo Escot. DChaos: An R Package for Chaotic Time Series Analysis
253 -- 0Alejandro Saavedra-Nieves, Paula Saavedra-Nieves. IndexNumber: An R Package for Measuring the Evolution of Magnitudes
276 -- 0Genaro Sucarrat. garchx: Flexible and Robust GARCH-X Modeling
292 -- 0Valeria Policastro, Dario Righelli, Annamaria Carissimo, Luisa Cutillo, Italia de Feis. ROBustness In Network (robin): an R Package for Comparison and Validation of Communities
310 -- 0Ryan A. Peterson. Finding Optimal Normalizing Transformations via bestNormalize
330 -- 0Javier Roca-Pardiñas, María Xosé Rodríguez-Álvarez, Stefan Sperlich. Package wsbackfit for Smooth Backfitting Estimation of Generalized Structured Models
351 -- 0Sebastian Kreutzer, Johannes Friedrich, Vasilis Pagonis, Christian Laag, Ena Rajovic, Christoph Schmidt. RLumCarlo: Simulating Cold Light using Monte Carlo Methods
366 -- 0Alexandre Brouste, Christophe Dutang, Darel Noutsa Mieniedou. OneStep : Le Cam's One-step Estimation Procedure
378 -- 0Ezequiel Toum, Mariano H. Masiokas, Ricardo Villalba, Pierre Pitte, Lucas Ruiz. The HBV.IANIGLA Hydrological Model
396 -- 0Paul Walter. The R Package smicd: Statistical Methods for Interval-Censored Data
413 -- 0John Hughes. krippendorffsalpha: An R Package for Measuring Agreement Using Krippendorff's Alpha Coefficient
426 -- 0Majeed Simaan. Working with CRSP/COMPUSTAT in R: Reproducible Empirical Asset Pricing
444 -- 0Raphael Sonabend, Franz J. Király. distr6: R6 Object-Oriented Probability Distributions Interface in R
467 -- 0Ostap Okhrin, Simon Trimborn, Martin Waltz. gofCopula: Goodness-of-Fit Tests for Copulae
499 -- 0Ana C. Cebrián, Jesús Asín. Analyzing Dependence between Point Processes in Time Using IndTestPP
516 -- 0Earo Wang, Dianne Cook. Conversations in Time: Interactive Visualization to Explore Structured Temporal Data
525 -- 0María Xosé Rodríguez-Álvarez, Vanda Inácio. ROCnReg: An R Package for Receiver Operating Characteristic Curve Inference With and Without Covariates
556 -- 0Michael J. Kane, Xun Jiang, Simon Urbanek. Automating Reproducible, Collaborative Clinical Trial Document Generation with the listdown Package
563 -- 0Michael J. Kane. Towards a Grammar for Processing Clinical Trial Data
570 -- 0Daniel D. Sjoberg, Karissa Whiting, Michael Curry, Jessica A. Lavery, Joseph Larmarange. Reproducible Summary Tables with the gtsummary Package
581 -- 0Lucas Kook, Torsten Hothorn. Regularized Transformation Models: The tramnet Package
595 -- 0Brandon Bolte, Nicolás Schmidt, Sergio Béjar, Nguyen Huynh, Bumba Mukherjee. BayesSPsurv: An R Package to Estimate Bayesian (Spatial) Split-Population Survival Models
614 -- 0Rachael C. Aikens, Joseph Rigdon, Justin Lee, Michael T. M. Baiocchi, Andrew B. Goldstone, Peter Chiu, Y. Joseph Woo, Jonathan H. Chen. stratamatch: Prognostic Score Stratification Using a Pilot Design