Journal: IEEE/ACM Trans. Comput. Biology Bioinform.

Volume 11, Issue 2

293 -- 303ChangKug Kim, Jin-A. Kim, Ji-Weon Choi, In-Seon Jeong, Yi-Seul Moon, Dong-Suk Park, Young Joo Seol, Yong-Kab Kim, Yong Hwan Kim, Yeon-Ki Kim. A Multi-Layered Screening Method to Identify Plant Regulatory Genes
304 -- 315Tom M. W. Nye. An Algorithm for Constructing Principal Geodesics in Phylogenetic Treespace
316 -- 324Abeer Eshra, Ayman El-Sayed. An Odd Parity Checker Prototype Using DNAzyme Finite State Machine
325 -- 335Ruth Davidson, Seth Sullivant. Distance-Based Phylogenetic MethodsAround a Polytomy
336 -- 346Kristopher L. Patton, David J. John, James L. Norris, Daniel R. Lewis, Gloria K. Muday. Hierarchical Probabilistic Interaction Modeling for Multiple Gene Expression Replicates
347 -- 360Pugalendhi GaneshKumar, Chellasamy Rani, Durairaj Devaraj, T. Aruldoss Albert Victoire. Hybrid Ant Bee Algorithm for Fuzzy Expert System Based Sample Classification
361 -- 374Shunji Tanaka. Improved Exact Enumerative Algorithmsfor the Planted ($l$, $d$)-Motif Search Problem
375 -- 388Veli Mäkinen, Niko Välimäki, Jouni Sirén. Indexing Graphs for Path Queries with Applications in Genome Research
389 -- 397Anthony Labarre, Sicco Verwer. Merging Partially Labelled Trees: Hardness and a DeclarativeProgramming Solution
398 -- 406Weiming Li, Bin Ma, Kaizhong Zhang. Optimizing Spaced $k$-mer Neighbors for Efficient Filtration in Protein Similarity Search
407 -- 418Xiwei Tang, Jianxin Wang, Jiancheng Zhong, Yi Pan. Predicting Essential Proteins Basedon Weighted Degree Centrality
419 -- 430Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Lin Chen, Jing He. Solving the Secondary Structure MatchingProblem in Cryo-EM De Novo ModelingUsing a Constrained $K$-Shortest Path Graph Algorithm
431 -- 440Miha Moskon, Miha Mraz. Systematic Approach to Computational Designof Gene Regulatory Networks with Information Processing Capabilities
441 -- 452Dan Tulpan, Derek H. Smith, Roberto Montemanni. Thermodynamic Post-Processing versusGC-Content Pre-Processing for DNA CodesSatisfying the Hamming Distance andReverse-Complement Constraints