Journal: IEEE/ACM Trans. Comput. Biology Bioinform.

Volume 11, Issue 6

981 -- 983Yufei Huang, Yidong Chen, Xiaoning Qian. Selected Articles from the 2012 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS 2012)
984 -- 994Karl B. Gregory, Amin A. Momin, Kevin R. Coombes, Veerabhadran Baladandayuthapani. Latent Feature Decompositions for Integrative Analysis of Multi-Platform Genomic Data
995 -- 1008Noah Berlow, Saad Haider, Qian Wan, Mathew Geltzeiler, Lara E. Davis, Charles Keller, Ranadip Pal. An Integrated Approach to Anti-Cancer Drug Sensitivity Prediction
1009 -- 1019Ye Tian, Sean S. Wang, Zhen Zhang, Olga C. Rodriguez, Emanuel Petricoin III, Ie-Ming Shih, Daniel Chan, Maria Avantaggiati, Guoqiang Yu, Shaozhen Ye, Robert Clarke, Chao Wang, Bai Zhang, Yue Wang, Chris Albanese. Integration of Network Biology and Imaging to Study Cancer Phenotypes and Responses
1020 -- 1028Meng Lu, Hye-Seung Lee, David Hadley, Jianhua Z. Huang, Xiaoning Qian. Logistic Principal Component Analysis for Rare Variants in Gene-Environment Interaction Analysis
1029 -- 1037Seyed Javad Sajjadi, Xiaoning Qian, Bo Zeng, Amin Ahmadi-Adl. Network-Based Methods to Identify Highly Discriminating Subsets of Biomarkers
1038 -- 1044Yanxun Xu, Xiaofeng Zheng, Yuan Yuan, Marcos R. Estecio, Jean-Pierre Issa, Peng Qiu, Yuan Ji, Shoudan Liang. BM-SNP: A Bayesian Model for SNP Calling Using High Throughput Sequencing Data
1045 -- 1051Peng Qiu. Unfold High-Dimensional Clouds for Exhaustive Gating of Flow Cytometry Data
1052 -- 1065Maina Bitar, Glória Regina Franco. A Basic Protein Comparative Three-Dimensional Modeling Methodological Workflow Theory and Practice
1066 -- 1076Choujun Zhan, Wuchao Situ, Lam Fat Yeung, Peter Wai-Ming Tsang, GenKe Yang. A Parameter Estimation Method for Biological Systems modelled by ODE/DDE Models Using Spline Approximation and Differential Evolution Algorithm
1077 -- 1086Fumihide Shiraishi, Erika Yoshida, Eberhard O. Voit. An Efficient and Very Accurate Method for Calculating Steady-State Sensitivities in Metabolic Reaction Systems
1087 -- 1098Anveshi Charuvaka, Huzefa Rangwala. Classifying Protein Sequences Using Regularized Multi-Task Learning
1099 -- 1107László Dávid, Alexander Bockmayr. Computing Elementary Flux Modes Involving a Set of Target Reactions
1108 -- 1118Ahsan Zaigam Rizvi, C. Bhattacharya. Detection of Replication Origin Sites in Herpesvirus Genomes by Clustering and Scoring of Palindromes with Quadratic Entropy Measures
1119 -- 1130Kamal Taha. Determining Semantically Related Significant Genes
1131 -- 1145Saima Rathore, Mutawarra Hussain, Asifullah Khan. GECC: Gene Expression Based Ensemble Classification of Colon Samples
1146 -- 1156Bo Liao, Yan Jiang, Wei Liang, Wen Zhu, Lijun Cai, Zhi Cao. Gene Selection Using Locality Sensitive Laplacian Score
1157 -- 1169Michiel Stock, Thomas Fober, Eyke Hüllermeier, Serghei Glinca, Gerhard Klebe, Tapio Pahikkala, Antti Airola, Bernard De Baets, Willem Waegeman. Identification of Functionally Related Enzymes by Learning-to-Rank Methods
1170 -- 1183Anirban Mukhopadhyay 0001, Monalisa Mandal. Identifying Non-Redundant Gene Markers from Microarray Data: A Multiobjective Variable Length PSO-Based Approach
1184 -- 1195Yoram Zarai, Michael Margaliot, Tamir Tuller. Maximizing Protein Translation Rate in the Ribosome Flow Model: The Homogeneous Case
1196 -- 1207Umesh Kalathiya, Monikaben Padariya, Maciej Baginski. Molecular Modeling and Evaluation of Novel Dibenzopyrrole Derivatives as Telomerase Inhibitors and Potential Drug for Cancer Therapy
1208 -- 1217Andri Mirzal. Nonparametric Tikhonov Regularized NMF and Its Application in Cancer Clustering
1218 -- 1228Parthan Kasarapu, Maria Garcia de la Banda, Arun Siddharth Konagurthu. On Representing Protein Folding Patterns Using Non-Linear Parametric Curves
1229 -- 1238Filippo Disanto, Noah A. Rosenberg. On the Number of Ranked Species Trees Producing Anomalous Ranked Gene Trees
1239 -- 1252Hasin Afzal Ahmed, Priyakshi Mahanta, Dhruba Kumar Bhattacharyya, Jugal K. Kalita. Shifting-and-Scaling Correlation Based Biclustering Algorithm
1253 -- 1259Koichi Kobayashi, Kunihiko Hiraishi. ILP/SMT-Based Method for Design of Boolean Networks Based on Singleton Attractors
1260 -- 1263Loes Olde Loohuis, Andreas Witzel, Bud Mishra. Improving Detection of Driver Genes: Power-Law Null Model of Copy Number Variation in Cancer
1264 -- 1270Haiying Wang, Huiru Zheng. Organized Modularity in the Interactome: Evidence from the Analysis of Dynamic Organization in the Cell Cycle