| 252 | -- | 253 | Feng Luo, Xintao Wu. Guest Editorial for Special Section on BIBM 2013 |
| 254 | -- | 261 | Xingpeng Jiang, Xiaohua Hu, Weiwei Xu, E. K. Park. Predicting Microbial Interactions Using Vector Autoregressive Model with Graph Regularization |
| 262 | -- | 275 | Cen Wan, Alex Alves Freitas, João Pedro de Magalhães. Predicting the Pro-Longevity or Anti-Longevity Effect of Model Organism Genes with New Hierarchical Feature Selection Methods |
| 276 | -- | 288 | Wei Peng, Jianxin Wang, Yingjiao Cheng, Yu Lu, Fang-Xiang Wu, Yi Pan. UDoNC: An Algorithm for Identifying Essential Proteins Based on Protein Domains and Protein-Protein Interaction Networks |
| 289 | -- | 297 | Yongguo Mei, Adria Carbo, Stefan Hoops, Raquel Hontecillas, Josep Bassaganya-Riera. ENISI SDE: A New Web-Based Tool for Modeling Stochastic Processes |
| 298 | -- | 308 | Bin Pang, David Schlessman, Xingyan Kuang, Nan Zhao, Daniel Shyu, Dmitry Korkin, Chi-Ren Shyu. An Integrated Approach to Sequence-Independent Local Alignment of Protein Binding Sites |
| 309 | -- | 321 | Young-Rae Cho, Yanan Xin, Greg Speegle. P-Finder: Reconstruction of Signaling Networks from Protein-Protein Interactions and GO Annotations |
| 322 | -- | 334 | Jong Cheol Jeong, Xue-wen Chen. A New Semantic Functional Similarity over Gene Ontology |
| 335 | -- | 347 | Hossam M. Ashtawy, Nihar R. Mahapatra. A Comparative Assessment of Predictive Accuracies of Conventional and Machine Learning Scoring Functions for Protein-Ligand Binding Affinity Prediction |
| 348 | -- | 359 | Lina Yang, Yuan Yan Tang, Yang Lu, Huiwu Luo. A Fractal Dimension and Wavelet Transform Based Method for Protein Sequence Similarity Analysis |
| 360 | -- | 371 | Savas Konur, Marian Gheorghe. A Property-Driven Methodology for Formal Analysis of Synthetic Biology Systems |
| 372 | -- | 383 | Min Li, Yu Lu, Jianxin Wang, Fang-Xiang Wu, Yi Pan. A Topology Potential-Based Method for Identifying Essential Proteins from PPI Networks |
| 384 | -- | 397 | Qiang Yu, Hongwei Huo, Jeffrey Scott Vitter, Jun Huan, Yakov Nekrich. An Efficient Exact Algorithm for the Motif Stem Search Problem over Large Alphabets |
| 398 | -- | 409 | Xian Zhang, Ligang Wu, Shaochun Cui. An Improved Integral Inequality to Stability Analysis of Genetic Regulatory Networks With Interval Time-Varying Delays |
| 410 | -- | 421 | Zhenhua Li, Ying He, Limsoon Wong, Jinyan Li. Burial Level Change Defines a High Energetic Relevance for Protein Binding Interfaces |
| 422 | -- | 432 | Gautam Dasarathy, Robert D. Nowak, Sébastien Roch. Data Requirement for Phylogenetic Inference from Multiple Loci: A New Distance Method |
| 433 | -- | 444 | Jun Meng, Jing Zhang, Yushi Luan. Gene Selection Integrated with Biological Knowledge for Plant Stress Response Using Neighborhood System and Rough Set Theory |
| 445 | -- | 454 | Trevor Cickovski, Tiffany Flor, Galen Irving-Sachs, Philip Novikov, James Parda, Giri Narasimhan. GPUDePiCt: A Parallel Implementation of a Clustering Algorithm for Computing Degenerate Primers on Graphics Processing Units |
| 455 | -- | 466 | Bingjing Cai, Haiying Wang, Huiru Zheng, Hui Wang. Identification of Protein Complexes from Tandem Affinity Purification/Mass Spectrometry Data via Biased Random Walk |
| 467 | -- | 472 | Xueming Liu, Linqiang Pan. Identifying Driver Nodes in the Human Signaling Network Using Structural Controllability Analysis |
| 473 | -- | 486 | Hasan M. Jamil. Improving Integration Effectiveness of ID Mapping Based Biological Record Linkage |
| 487 | -- | 498 | W. J. R. M. Priyadarshana, Georgy Sofronov. Multiple Break-Points Detection in Array CGH Data via the Cross-Entropy Method |