Journal: IEEE/ACM Trans. Comput. Biology Bioinform.

Volume 15, Issue 1

1 -- 14Yanbo Wang, Weikang Qian, Bo Yuan. A Graphical Model of Smoking-Induced Global Instability in Lung Cancer
15 -- 26Jesper Jansson, Ramesh Rajaby, Chuanqi Shen, Wing-Kin Sung. Algorithms for the Majority Rule (+) Consensus Tree and the Frequency Difference Consensus Tree
27 -- 37Renu Vyas, Sanket Bapat, Purva Goel, Muthukumarasamy Karthikeyan, Sanjeev S. Tambe, Bhaskar D. Kulkarni. Application of Genetic Programming (GP) Formalism for Building Disease Predictive Models from Protein-Protein Interactions (PPI) Data
38 -- 45Bin Hu 0001, Xiaowei Li 0005, Shuting Sun, Martyn Ratcliffe. Attention Recognition in EEG-Based Affective Learning Research Using CFS+KNN Algorithm
46 -- 59Anton Ushakov, Xenia Klimentova, Igor Vasilyev. Bi-level and Bi-objective p-Median Type Problems for Integrative Clustering: Application to Analysis of Cancer Gene-Expression and Drug-Response Data
60 -- 67Narayanan C. Viswanath. Calculating the Expected Time to Eradicate HIV-1 Using a Markov Chain
68 -- 82Alireza Karbalayghareh, Ulisses M. Braga-Neto, Jianping Hua, Edward Russell Dougherty. Classification of State Trajectories in Gene Regulatory Networks
83 -- 95Tom Hartmann, An-Chiang Chu, Martin Middendorf, Matthias Bernt. Combinatorics of Tandem Duplication Random Loss Mutations on Circular Genomes
96 -- 108Ademir Hujdurovic, Ursa Kacar, Martin Milanic, Bernard Ries, Alexandru I. Tomescu. Complexity and Algorithms for Finding a Perfect Phylogeny from Mixed Tumor Samples
109 -- 116Wei Zhang, Jia Xu, Yuanyuan Li, Xiufen Zou. Detecting Essential Proteins Based on Network Topology, Gene Expression Data, and Gene Ontology Information
117 -- 128Cinzia Pizzi, Mattia Ornamenti, Simone Spangaro, Simona E. Rombo, Laxmi Parida. Efficient Algorithms for Sequence Analysis with Entropic Profiles
129 -- 146Hyunjin Kim, Sang-Min Choi, Sanghyun Park. GSEH: A Novel Approach to Select Prostate Cancer-Associated Genes Using Gene Expression Heterogeneity
147 -- 156Jian Zhang, Haiting Chai, Bo Gao, Guifu Yang, Zhiqiang Ma. HEMEsPred: Structure-Based Ligand-Specific Heme Binding Residues Prediction by Using Fast-Adaptive Ensemble Learning Scheme
157 -- 167Kamal Taha. Inferring the Functions of Proteins from the Interrelationships between Functional Categories
168 -- 180Guillermo Leale, Ariel E. Bayá, Diego H. Milone, Pablo M. Granitto, Georgina Stegmayer. Inferring Unknown Biological Function by Integration of GO Annotations and Gene Expression Data
181 -- 190Nikolaos-Kosmas Chlis, Ekaterini S. Bei, Michalis Zervakis. Introducing a Stable Bootstrap Validation Framework for Reliable Genomic Signature Extraction
191 -- 204Eddie Y. T. Ma, Sujeevan Ratnasingham, Stefan C. Kremer. Machine Learned Replacement of N-Labels for Basecalled Sequences in DNA Barcoding
205 -- 217Laura Jetten, Leo van Iersel. Nonbinary Tree-Based Phylogenetic Networks
218 -- 230Daniel N. Mohsenizadeh, Roozbeh Dehghannasiri, Edward R. Dougherty. Optimal Objective-Based Experimental Design for Uncertain Dynamical Gene Networks with Experimental Error
231 -- 243Behnam Behinaein, Karen Rudie, Waheed Sangrar. Petri Net Siphon Analysis and Graph Theoretic Measures for Identifying Combination Therapies in Cancer
244 -- 250Shujaat Khan, Imran Naseem, Roberto Togneri, Mohammed Bennamoun. RAFP-Pred: Robust Prediction of Antifreeze Proteins Using Localized Analysis of n-Peptide Compositions
251 -- 256Roman Czapla. Random Sets of Stadiums in Square and Collective Behavior of Bacteria
257 -- 270Vinicius R. P. Borges, Maria Cristina Ferreira de Oliveira, Thaís Garcia Silva, Armando Augusto Henriques Vieira, Bernd Hamann. Region Growing for Segmenting Green Microalgae Images
271 -- 285M. Syed Ali 0001, N. Gunasekaran, Choon Ki Ahn, Peng Shi 0001. Sampled-Data Stabilization for Fuzzy Genetic Regulatory Networks with Leakage Delays
286 -- 299Chendra Hadi Suryanto, Hiroto Saigo, Kazuhiro Fukui. Structural Class Classification of 3D Protein Structure Based on Multi-View 2D Images
300 -- 308Gerd Anders, Ulrich Hassiepen, Stephan Theisgen, Stephan Heymann, Lionel Muller, Tania Panigada, Daniel Huster, Sergey A. Samsonov. The Intrinsic Pepsin Resistance of Interleukin-8 Can Be Explained from a Combined Bioinformatical and Experimental Approach
309 -- 315Jiawei Luo 0001, Wei Huang, Buwen Cao. A Novel Approach to Identify the miRNA-mRNA Causal Regulatory Modules in Cancer
316 -- 322Feng Bao 0002, Yue Deng 0001, Qionghai Dai. ACID: Association Correction for Imbalanced Data in GWAS
323 -- 329Hongmei Jiao, Michael Shi, Qikun Shen, Junwu Zhu, Peng Shi 0001. Filter Design with Adaptation to Time-Delay Parameters for Genetic Regulatory Networks
330 -- 336Ahed Elmsallati, Abdulghani Msalati, Jugal Kalita. Index-Based Network Aligner of Protein-Protein Interaction Networks
337 -- 342Elizabeth S. Allman, James H. Degnan, John A. Rhodes. Species Tree Inference from Gene Splits by Unrooted STAR Methods
343 -- 349Frederick A. Matsen IV, Sara C. Billey, Arnold Kas, Matjaz Konvalinka. Tanglegrams: A Reduction Tool for Mathematical Phylogenetics