Journal: IEEE/ACM Trans. Comput. Biology Bioinform.

Volume 15, Issue 2

350 -- 351Adrian Horia Dediu, Carlos Martín-Vide. Selected Papers of the First International Conference on Algorithms for Computational Biology (AlCoB 2014)
352 -- 363Thiago da Silva Arruda, Ulisses Dias, Zanoni Dias. A GRASP-Based Heuristic for the Sorting by Length-Weighted Inversions Problem
364 -- 376Ivo Hedtke, Ioana M. Lemnian, Ivo Grosse, Matthias Müller-Hannemann. Optimal Block-Based Trimming for Next Generation Sequencing
377 -- 386Congping Lin, Laurent Lemarchand, Reinhardt Euler, Imogen Sparkes. Modeling the Geometry and Dynamics of the Endoplasmic Reticulum Network
387 -- 395Amina Noor, Aitzaz Ahmad, Erchin Serpedin. SparseNCA: Sparse Network Component Analysis for Recovering Transcription Factor Activities with Incomplete Prior Information
396 -- 397Jijun Tang, Lu Tian, Yi-Ping Phoebe Chen. th Asia Pacific Bioinformatics Conference
398 -- 410Daniel H. Huson, Simone Linz. Autumn Algorithm - Computation of Hybridization Networks for Realistic Phylogenetic Trees
411 -- 421W. Ma, D. Smirnov, J. Forman, A. Schweickart, C. Slocum, S. Srinivasan, R. Libeskind-Hadas. DTL-RnB: Algorithms and Tools for Summarizing the Space of DTL Reconciliations
422 -- 431Zhi-Zhong Chen, Qilong Feng, Chao Shen, Jianxin Wang, Lusheng Wang. Algorithms for Pedigree Comparison
432 -- 440Moonshik Shin, Donjin Jang, Hojung Nam, Kwang Hyung Lee, Doheon Lee. Predicting the Absorption Potential of Chemical Compounds Through a Deep Learning Approach
441 -- 451Seunghyun Park, Hyun Soo Choi, Byunghan Lee, Jongsik Chun, Joong-Ho Won, Sungroh Yoon. hc-OTU: A Fast and Accurate Method for Clustering Operational Taxonomic Units Based on Homopolymer Compaction
452 -- 459Dimitris P. Papamichail, Hongmei Liu, Vitor Machado, Nathan Gould, J. Robert Coleman, Georgios Papamichail. Codon Context Optimization in Synthetic Gene Design
460 -- 468Jiangeng Li, Wei Zhang, Xiaodan Li. 3D Genome Reconstruction with ShRec3D+ and Hi-C Data
469 -- 481Rahul Singh, Rachel Beasley, Thavy Long, Conor R. Caffrey. Algorithmic Mapping and Characterization of the Drug-Induced Phenotypic-Response Space of Parasites Causing Schistosomiasis
482 -- 483Bijoy K. Ghosh, Aniruddha Datta, Ranadip Pal. Deep Sequencing Data Analysis
484 -- 493Jason M. Knight, Ivan Ivanov, Karen Triff, Robert S. Chapkin, Edward R. Dougherty. Detecting Multivariate Gene Interactions in RNA-Seq Data Using Optimal Bayesian Classification
494 -- 505Noushin Ghaffari, Osama A. Arshad, Hyundoo Jeong, John Thiltges, Michael F. Criscitiello, Byung-Jun Yoon, Aniruddha Datta, Charles D. Johnson. Examining De Novo Transcriptome Assemblies via a Quality Assessment Pipeline
506 -- 515Mansuck Kim, Huan Zhang, Charles Woloshuk, Won Bo Shim, Byung-Jun Yoon. Computational Prediction of Pathogenic Network Modules in Fusarium verticillioides
516 -- 525Arghavan Bahadorinejad, Ulisses Braga-Neto. Optimal Fault Detection and Diagnosis in Transcriptional Circuits Using Next-Generation Sequencing
526 -- 534Xiaodong Cui, Lin Zhang 0015, Jia Meng, Manjeet K. Rao, Yidong Chen, Yufei Huang. MeTDiff: A Novel Differential RNA Methylation Analysis for MeRIP-Seq Data
535 -- 536Jing Zhang 0010, Tianming Liu, Gopikrishna Deshpande. Probabilistic Methods in Computational Neuroscience
537 -- 550Yize Zhao, Jian Kang, Qi Long. Bayesian Multiresolution Variable Selection for Ultra-High Dimensional Neuroimaging Data
551 -- 561Lin Yuan, Fanglin Chen, Ling-Li Zeng, Lubin Wang, Dewen Hu. Gender Identification of Human Brain Image with A Novel 3D Descriptor
562 -- 569Meng Hu, Wu Li, Hualou Liang. A Copula-Based Granger Causality Measure for the Analysis of Neural Spike Train Data
570 -- 580Lijun Zhang, Ming Wang, Nicholas W. Sterling, Eun-Young Lee, Paul J. Eslinger, Daymond Wagner, Guangwei Du, Mechelle Lewis, Young Truong, F. DuBois Bowman, Xuemei Huang 0004. Cortical Thinning and Cognitive Impairment in Parkinson's Disease without Dementia
581 -- 587João Ricardo Sato, Maciel Calebe Vidal, Suzana de Siqueira Santos, Katlin Brauer Massirer, André Fujita. Complex Network Measures in Autism Spectrum Disorders
588 -- 598Biing-Feng Wang. A New Efficient Algorithm for the Frequent Gene Team Problem
599 -- 612Suneetha Uppu, Aneesh Krishna, Raj P. Gopalan. A Review on Methods for Detecting SNP Interactions in High-Dimensional Genomic Data
613 -- 623Mahdi Barat Zadeh Joveini, Javad Sadri. Application of Fractal Theory on Motifs Counting in Biological Networks
624 -- 632Jin Liu, Min Li 0007, Wei Lan, Fang-Xiang Wu, Yi Pan 0001, Jianxin Wang. Classification of Alzheimer's Disease Using Whole Brain Hierarchical Network
633 -- 646Jinghui Li, Hiroshi Nagamochi, Tatsuya Akutsu. Enumerating Substituted Benzene Isomers of Tree-Like Chemical Graphs
647 -- 658Xiaoke Ma, Wanxin Tang, Peizhuo Wang, Xingli Guo, Lin Gao. Extracting Stage-Specific and Dynamic Modules Through Analyzing Multiple Networks Associated with Cancer Progression
659 -- 672Jayanta Kumar Pal, Shubhra Sankar Ray, Sung-Bae Cho, Sankar K. Pal. Fuzzy-Rough Entropy Measure and Histogram Based Patient Selection for miRNA Ranking in Cancer
673 -- 687Sanghamitra Bandyopadhyay, Saurav Mallik. Integrating Multiple Data Sources for Combinatorial Marker Discovery: A Study in Tumorigenesis