| 1 | -- | 2 | Yoshihiro Yamanishi, Yasubumi Sakakibara, Yi-Ping Phoebe Chen. Guest Editorial for the 16th Asia Pacific Bioinformatics Conference |
| 3 | -- | 13 | Kouichi Kimura, Asako Koike. Parallel Computation of the Burrows-Wheeler Transform of Short Reads Using Prefix Parallelism |
| 14 | -- | 22 | Jordan Haack, Eli Zupke, Andrew Ramirez, Yi-Chieh Wu, Ran Libeskind-Hadas. Computing the Diameter of the Space of Maximum Parsimony Reconciliations in the Duplication-Transfer-Loss Model |
| 23 | -- | 30 | Romeo Rizzi, Massimo Cairo, Veli Mäkinen, Alexandru I. Tomescu, Daniel Valenzuela 0001. Hardness of Covering Alignment: Phase Transition in Post-Sequence Genomics |
| 31 | -- | 42 | Andrzej Mizera, Jun Pang, Hongyang Qu 0001, Qixia Yuan. Taming Asynchrony for Attractor Detection in Large Boolean Networks |
| 43 | -- | 51 | Tiancong Wang, Bin Ma. Adjacent Y-Ion Ratio Distributions and Its Application in Peptide Sequencing |
| 52 | -- | 62 | Tom Hartmann, Matthias Bernt, Martin Middendorf. An Exact Algorithm for Sorting by Weighted Preserving Genome Rearrangements |
| 63 | -- | 76 | Lei Li 0012, Mukul S. Bansal. An Integrated Reconciliation Framework for Domain, Gene, and Species Level Evolution |
| 77 | -- | 90 | Yuhei Nishiyama, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu. Resource Cut, a New Bounding Procedure to Algorithms for Enumerating Tree-Like Chemical Graphs |
| 91 | -- | 92 | Bairong Shen, Xiaoqian Jiang, Xingming Zhao. Modeling and Simulation Studies of Complex Biological Systems for Precision Medicine and Healthcare |
| 93 | -- | 102 | Md. Nazmus Sadat, Md Momin Al Aziz, Noman Mohammed, Feng Chen 0016, Xiaoqian Jiang, Shuang Wang 0002. SAFETY: Secure gwAs in Federated Environment through a hYbrid Solution |
| 103 | -- | 112 | Chengsheng Mao, Yuan Zhao, Mengxin Sun, Yuan Luo. Are My EHRs Private Enough? Event-Level Privacy Protection |
| 113 | -- | 123 | Yichen Jiang, Jenny Hamer, Chenghong Wang, Xiaoqian Jiang, Miran Kim, Yongsoo Song, Yuhou Xia, Noman Mohammed, Md. Nazmus Sadat, Shuang Wang 0002. SecureLR: Secure Logistic Regression Model via a Hybrid Cryptographic Protocol |
| 124 | -- | 130 | Mengmeng Sun, Tao Ding, Xu-Qing Tang, Keming Yu. An Efficient Mixed-Model for Screening Differentially Expressed Genes of Breast Cancer Based on LR-RF |
| 131 | -- | 138 | Wenliang Zhu, Xiaohe Chen, Yan Wang, Lirong Wang. Arrhythmia Recognition and Classification Using ECG Morphology and Segment Feature Analysis |
| 139 | -- | 153 | Zexian Zeng, Yu Deng, Xiaoyu Li, Tristan Naumann, Yuan Luo. Natural Language Processing for EHR-Based Computational Phenotyping |
| 154 | -- | 162 | Yin-Ying Wang, Chunfeng Cui, Liqun Qi 0001, Hong Yan 0001, Xing-Ming Zhao. DrPOCS: Drug Repositioning Based on Projection Onto Convex Sets |
| 163 | -- | 171 | Dewu Ding, Xiao Sun. A Comparative Study of Network Motifs in the Integrated Transcriptional Regulation and Protein Interaction Networks of Shewanella |
| 172 | -- | 182 | Juan Wang, Jin-Xing Liu, Chun-Hou Zheng, Yaxuan Wang, Xiang-Zhen Kong, Chang-Gang Wen. A Mixed-Norm Laplacian Regularized Low-Rank Representation Method for Tumor Samples Clustering |
| 183 | -- | 192 | Sushmita Paul, Dhanajit Brahma. An Integrated Approach for Identification of Functionally Similar MicroRNAs in Colorectal Cancer |
| 193 | -- | 207 | Alireza Karbalayghareh, Ulisses Braga-Neto, Edward R. Dougherty. Classification of Single-Cell Gene Expression Trajectories from Incomplete and Noisy Data |
| 208 | -- | 221 | Kin-On Cheng, Ngai-Fong Law, Wan-Chi Siu. Clustering-Based Compression for Population DNA Sequences |
| 222 | -- | 232 | Ping Luo 0003, Li-Ping Tian, Jishou Ruan, Fang-Xiang Wu. Disease Gene Prediction by Integrating PPI Networks, Clinical RNA-Seq Data and OMIM Data |
| 233 | -- | 243 | Cheng Yan, Jianxin Wang, Peng Ni, Wei Lan, Fang-Xiang Wu, Yi Pan 0001. DNRLMF-MDA: Predicting microRNA-Disease Associations Based on Similarities of microRNAs and Diseases |
| 244 | -- | 257 | Ronghui Ju, Chenhui Hu, Pan Zhou, Quanzheng Li. Early Diagnosis of Alzheimer's Disease Based on Resting-State Brain Networks and Deep Learning |
| 258 | -- | 271 | Paola Pesantez-Cabrera, Ananth Kalyanaraman. Efficient Detection of Communities in Biological Bipartite Networks |
| 272 | -- | 282 | Xiangtao Li, Ka Chun Wong. Elucidating Genome-Wide Protein-RNA Interactions Using Differential Evolution |
| 283 | -- | 291 | Xuan Zhang, Quan Zou 0001, Alfonso Rodríguez-Patón, Xiangxiang Zeng. Meta-Path Methods for Prioritizing Candidate Disease miRNAs |
| 292 | -- | 300 | Bin Liu 0014, Junjie Chen 0004, Mingyue Guo, Xiaolong Wang 0001. Protein Remote Homology Detection and Fold Recognition Based on Sequence-Order Frequency Matrix |
| 301 | -- | 311 | Minghan Chen, Brandon D. Amos, Layne T. Watson, John J. Tyson, Young Cao, Clifford A. Shaffer, Michael W. Trosset, Cihan Oguz, Gisella Kakoti. Quasi-Newton Stochastic Optimization Algorithm for Parameter Estimation of a Stochastic Model of the Budding Yeast Cell Cycle |
| 312 | -- | 321 | Cheng Liu 0001, Hau-San Wong. Structured Penalized Logistic Regression for Gene Selection in Gene Expression Data Analysis |
| 322 | -- | 335 | Andrés F. López-Lopera, Mauricio A. Álvarez. Switched Latent Force Models for Reverse-Engineering Transcriptional Regulation in Gene Expression Data |
| 336 | -- | 349 | Jiao Zhang, Sam Kwong, Ka Chun Wong. ToBio: Global Pathway Similarity Search Based on Topological and Biological Features |