Journal: IEEE/ACM Trans. Comput. Biology Bioinform.

Volume 16, Issue 2

350 -- 351Shuigeng Zhou, Yi-Ping Phoebe Chen, Hiroshi Mamitsuka. Editorial
352 -- 364Xiaojun Chen 0006, Joshua Z. Huang, Qingyao Wu, Min Yang. Subspace Weighting Co-Clustering of Gene Expression Data
365 -- 376Bo Tian, Qiong Duan, Can Zhao, Ben-teng, Zengyou He. Reinforce: An Ensemble Approach for Inferring PPI Network from AP-MS Data
377 -- 387Bin Xu, Jihong Guan, Yang Wang, Zewei Wang. Essential Protein Detection by Random Walk on Weighted Protein-Protein Interaction Networks
388 -- 395Weiping Sun, Yi Liu, Gilles A. Lajoie, Bin Ma, Kaizhong Zhang. An Improved Approach for N-Linked Glycan Structure Identification from HCD MS/MS Spectra
396 -- 406Jingpu Zhang, Zuping Zhang 0001, Zhigang Chen, Lei Deng. Integrating Multiple Heterogeneous Networks for Novel LncRNA-Disease Association Inference
407 -- 416Zuping Zhang 0001, Jingpu Zhang, Chao Fan, Yongjun Tang, Lei Deng. KATZLGO: Large-Scale Prediction of LncRNA Functions by Using the KATZ Measure Based on Multiple Networks
417 -- 424Min Li 0007, Ruiqing Zheng, Yaohang Li, Fang-Xiang Wu, Jianxin Wang. MGT-SM: A Method for Constructing Cellular Signal Transduction Networks
425 -- 433Shaoliang Peng, Yingbo Cui, Shunyun Yang, Wenhe Su, Xiaoyu Zhang, Tenglilang Zhang, Weiguo Liu, Xingming Zhao. A CPU/MIC Collaborated Parallel Framework for GROMACS on Tianhe-2 Supercomputer
434 -- 441Jie Zhang 0049, Zhigen Zhao, Kai Zhang 0001, Zhi Wei. A Feature Sampling Strategy for Analysis of High Dimensional Genomic Data
442 -- 454Kefei Liu 0001, Jieping Ye, Yang Yang, Li Shen 0001, Hui Jiang 0002. A Unified Model for Joint Normalization and Differential Gene Expression Detection in RNA-Seq Data
455 -- 464Wei Zhang 0089, Shu-Lin Wang. An Integrated Framework for Identifying Mutated Driver Pathway and Cancer Progression
465 -- 474Tim Michels, Dimitri Berh, Xiaoyi Jiang 0001. An RJMCMC-Based Method for Tracking and Resolving Collisions of Drosophila Larvae
475 -- 489Lu Zhang 0021, Qiuping Pan, Yue Wang, Xintao Wu, Xinghua Shi. Bayesian Network Construction and Genotype-Phenotype Inference Using GWAS Statistics
490 -- 509Koyel Mandal, Rosy Sarmah, Dhruba Kumar Bhattacharyya. Biomarker Identification for Cancer Disease Using Biclustering Approach: An Empirical Study
510 -- 523Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter F. Stadler. Chemical Transformation Motifs - Modelling Pathways as Integer Hyperflows
524 -- 537Shahin Boluki, Mohammad Shahrokh Esfahani, Xiaoning Qian, Edward R. Dougherty. Constructing Pathway-Based Priors within a Gaussian Mixture Model for Bayesian Regression and Classification
538 -- 549Huanan Zhang, David Roe, Rui Kuang. Detecting Population-Differentiation Copy Number Variants in Human Population Tree by Sparse Group Selection
550 -- 559Claudia Caudai, Emanuele Salerno, Monica Zoppè, Anna Tonazzini. Estimation of the Spatial Chromatin Structure Based on a Multiresolution Bead-Chain Model
560 -- 568Bilal Nizami, Elham Mousavinezhad Sarasia, Mehbub I. K. Momin, Bahareh Honarparvar. Estrogenic Active Stilbene Derivatives as Anti-Cancer Agents: A DFT and QSAR Study
569 -- 582Biing-Feng Wang, Chih-Yu Li. Fast Algorithms for Computing Path-Difference Distances
583 -- 595Mathias Foo, Jongrae Kim, Declan G. Bates. Modelling and Control of Gene Regulatory Networks for Perturbation Mitigation
596 -- 606Son P. Nguyen, Zhaoyu Li, Dong Xu 0002, Yi Shang. New Deep Learning Methods for Protein Loop Modeling
607 -- 616Yun Niu, Hongmei Wu, Yuwei Wang. Protein-Protein Interaction Identification Using a Similarity-Constrained Graph Model
617 -- 626Leena Salmela, Alexandru I. Tomescu. Safely Filling Gaps with Partial Solutions Common to All Solutions
627 -- 637Fernando Lopez-Caamal, Heinrich J. Huber. Stable IL-$1\beta$1β-Activation in an Inflammasome Signalling Model Depends on Positive and Negative Feedbacks and Tight Regulation of Protein Production
638 -- 649Amir Najafi, Sepehr Janghorbani, Seyed Abolfazl Motahari, Emad Fatemizadeh. Statistical Association Mapping of Population-Structured Genetic Data
650 -- 657Xiaohui Lin, Xin Huang, Lina Zhou, Weijie Ren, Jun Zeng, Weihong Yao, Xingyuan Wang. The Robust Classification Model Based on Combinatorial Features
658 -- 670Mingfu Shao, Carl Kingsford. Theory and A Heuristic for the Minimum Path Flow Decomposition Problem
671 -- 680Florian Kaiser, Dirk Labudde. Unsupervised Discovery of Geometrically Common Structural Motifs and Long-Range Contacts in Protein 3D Structures
681 -- 687Jiawei Luo, Chu Pan, Gen Xiang, Ying Yin. A Novel Cluster-Based Computational Method to Identify miRNA Regulatory Modules
688 -- 693Pengyao Ping, Lei Wang 0069, Linai Kuang, Songtao Ye, Muhammad Faisal Buland Iqbal, Tingrui Pei. A Novel Method for LncRNA-Disease Association Prediction Based on an lncRNA-Disease Association Network
694 -- 699Ruofan Xia, Yu Lin, Jun Zhou, Tieming Geng, Bing Feng, Jijun Tang. Phylogenetic Reconstruction for Copy-Number Evolution Problems
700 -- 0Warith Eddine Djeddi, Sadok Ben Yahia, Engelbert Mephu Nguifo. Corrections to "A Novel Computational Approach for Global Alignment for Multiple Biological Networks"