Journal: IEEE/ACM Trans. Comput. Biology Bioinform.

Volume 16, Issue 5

1409 -- 0Amarda Shehu, Giuseppe Pozzi, Tamer Kahveci. Guest Editorial for the ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics
1410 -- 1423Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova, Mauricio Soto. Does Relaxing the Infinite Sites Assumption Give Better Tumor Phylogenies? An ILP-Based Comparative Approach
1424 -- 1435Alan Cleary, Thiruvarangan Ramaraj, Indika Kahanda, Joann Mudge, Brendan Mumey. Exploring Frequented Regions in Pan-Genomic Graphs
1436 -- 1447Sunyoung Kwon, Sungroh Yoon. End-to-End Representation Learning for Chemical-Chemical Interaction Prediction
1448 -- 1458Laraib Malik, Robert Patro. Rich Chromatin Structure Prediction from Hi-C Data
1459 -- 1470Alexey Markin, Oliver Eulenstein. Cophenetic Median Trees
1471 -- 1482Lu Zhu, Ralf Hofestädt, Martin Ester. Tissue-Specific Subcellular Localization Prediction Using Multi-Label Markov Random Fields
1483 -- 1495Thuc Duy Le, Tao Hoang, Jiuyong Li, Lin Liu 0003, Huawen Liu, Shu Hu. A Fast PC Algorithm for High Dimensional Causal Discovery with Multi-Core PCs
1496 -- 1507Pieter Meysman, Yvan Saeys, Ehsan Sabaghian, Wout Bittremieux, Yves Van de Peer, Bart Goethals, Kris Laukens. Mining the Enriched Subgraphs for Specific Vertices in a Biological Graph
1515 -- 1523Shokoufeh Mirzaei, Tomer Sidi, Chen Keasar, Silvia Crivelli. Purely Structural Protein Scoring Functions Using Support Vector Machine and Ensemble Learning
1524 -- 1536Ritambhara Singh, Jack Lanchantin, Gabriel Robins, Yanjun Qi. Transfer String Kernel for Cross-Context DNA-Protein Binding Prediction
1537 -- 1549Tanay Kumar Saha, Ataur Katebi, Wajdi Dhifli, Mohammad Al Hasan. Discovery of Functional Motifs from the Interface Region of Oligomeric Proteins Using Frequent Subgraph Mining
1550 -- 1560Marco Frasca 0001, Nicolò Cesa-Bianchi. Multitask Protein Function Prediction through Task Dissimilarity
1561 -- 0Jérôme Feret, Heinz Koeppl. Editorial
1562 -- 1573Russ Harmer, Yves-Stan Le Cornec, Sébastien Légaré, Eugenia Oshurko. Bio-Curation for Cellular Signalling: The KAMI Project
1574 -- 1585Célia Biane, Franck Delaplace. Causal Reasoning on Boolean Control Networks Based on Abduction: Theory and Application to Cancer Drug Discovery
1586 -- 1597Houssam Abbas, Alena Rodionova, Konstantinos Mamouras, Ezio Bartocci, Scott A. Smolka, Radu Grosu. Quantitative Regular Expressions for Arrhythmia Detection
1598 -- 1609Alexander Lück, Pascal Giehr, Karl Nordström, Jörn Walter, Verena Wolf. Hidden Markov Modelling Reveals Neighborhood Dependence of Dnmt3a and 3b Activity
1610 -- 1619Hugues Mandon, Cui Su, Jun Pang 0001, Soumya Paul, Stefan Haar, Loïc Paulevé. Algorithms for the Sequential Reprogramming of Boolean Networks
1620 -- 1626Viacheslav Kapilevich, Shigeto Seno, Hideo Matsuda, Yoichi Takenaka. Chromatin 3D Reconstruction from Chromosomal Contacts Using a Genetic Algorithm
1627 -- 1634Jong Ho Jhee, Sunjoo Bang, Dong-Gi Lee, Hyunjung Shin. Comorbidity Scoring with Causal Disease Networks
1635 -- 1644Donghe Li, Wonji Kim, Longfei Wang, Kyong-Ah Yoon, Boyoung Park, Charny Park, Sun-Young Kong, Yongdeuk Hwang, Daehyun Baek, Eun-sook Lee, Sungho Won. Comparison of INDEL Calling Tools with Simulation Data and Real Short-Read Data
1645 -- 1655Shimpei Nishida, Shun Sakuraba, Kiyoshi Asai, Michiaki Hamada. Estimating Energy Parameters for RNA Secondary Structure Predictions Using Both Experimental and Computational Data
1656 -- 1662Je-Keun Rhee, Jinseon Yoo, Kyu Ryung Kim, Jeeyoon Kim, Yong Jae Lee, Byoung Chul Cho, Tae-Min Kim. Identification of Local Clusters of Mutation Hotspots in Cancer-Related Genes and Their Biological Relevance
1663 -- 1674Shailima Rampogu, Ayoung Baek, Rohit Bavi, Minky Son, Guang Ping Cao, Raj Kumar, Chanin Park, Amir Zeb, Rabia Mukthar Rana, Seok-Ju Park, Keun-Woo Lee. Identification of Novel Scaffolds with Dual Role as Antiepileptic and Anti-Breast Cancer
1675 -- 1684Hiroki Sudo, Masanobu Jimbo, Koji Nuida, Kana Shimizu. Secure Wavelet Matrix: Alphabet-Friendly Privacy-Preserving String Search for Bioinformatics
1685 -- 1692Man-Sun Kim, Dong San Kim, Jeong-Rae Kim. Stage-Dependent Gene Expression Profiling in Colorectal Cancer
1693 -- 1701SeongRyeol Moon, Curtis Balch, Sungjin Park, Jinhyuk Lee, Jiyong Sung, Seungyoon Nam. Systematic Inspection of the Clinical Relevance of TP53 Missense Mutations in Gastric Cancer
1702 -- 1711Fanchang Hao, Melvin Zhang, Hon Wai Leong. A 2-Approximation Scheme for Sorting Signed Permutations by Reversals, Transpositions, Transreversals, and Block-Interchanges
1712 -- 1721Limin Li, Menglan Cai. Drug Target Prediction by Multi-View Low Rank Embedding
1722 -- 1728Wen-Bin Xie, Hong Yan 0001, Xing-Ming Zhao. EmDL: Extracting miRNA-Drug Interactions from Literature
1729 -- 1742Yanbo Wang, Quan Liu, Shan Huang, Bo Yuan 0002. Learning a Structural and Functional Representation for Gene Expressions: To Systematically Dissect Complex Cancer Phenotypes
1743 -- 1752Yishu Wang, Huaying Fang, Dejie Yang, Hongyu Zhao, Minghua Deng. Network Clustering Analysis Using Mixture Exponential-Family Random Graph Models and Its Application in Genetic Interaction Data
1753 -- 1759Zhenni Zhao, Xinqi Gong. Protein-Protein Interaction Interface Residue Pair Prediction Based on Deep Learning Architecture
1760 -- 1772Xi Yang, Guoqiang Han, Hongmin Cai, Yan Song. Recovering Hidden Diagonal Structures via Non-Negative Matrix Factorization with Multiple Constraints