Journal: IEEE/ACM Trans. Comput. Biology Bioinform.

Volume 16, Issue 6

1773 -- 1784Anup Kumar Halder, Piyali Chatterjee, Mita Nasipuri, Dariusz Plewczynski, Subhadip Basu. 3gClust: Human Protein Cluster Analysis
1785 -- 1793Aurpan Majumder, Mrityunjay Sarkar, Prolay Sharma. A Composite Mode Differential Gene Regulatory Architecture based on Temporal Expression Profiles
1794 -- 1801Yujie Feng, Fan Yang 0021, Xichuan Zhou, Yanli Guo, Fang Tang, Fengbo Ren, Jishun Guo, Shuiwang Ji. A Deep Learning Approach for Targeted Contrast-Enhanced Ultrasound Based Prostate Cancer Detection
1802 -- 1815Aida Brankovic, Marjan Hosseini, Luigi Piroddi. A Distributed Feature Selection Algorithm Based on Distance Correlation with an Application to Microarrays
1816 -- 1829Li Zhang 0041, Ho-Chun Wu, Cheuk Hei Ho, Shing-Chow Chan. A Multi-Laplacian Prior and Augmented Lagrangian Approach to the Exploratory Analysis of Time-Varying Gene and Transcriptional Regulatory Networks for Gene Microarray Data
1830 -- 1842Anvita Gupta Malhotra, Sudha Singh, Mohit Jha, Khushhali Menaria Pandey. A Parametric Targetability Evaluation Approach for Vitiligo Proteome Extracted through Integration of Gene Ontologies and Protein Interaction Topologies
1843 -- 1854Juho Timonen, Henrik Mannerström, Harri Lähdesmäki, Jukka Intosalmi. A Probabilistic Framework for Molecular Network Structure Inference by Means of Mechanistic Modeling
1855 -- 1866Xiaoke Ma, Penggang Sun, Zhong-Yuan Zhang. An Integrative Framework for Protein Interaction Network and Methylation Data to Discover Epigenetic Modules
1867 -- 1878Claudia Caudai, Emanuele Salerno, Monica Zoppè, Ivan Merelli, Anna Tonazzini. ChromStruct 4: A Python Code to Estimate the Chromatin Structure from Hi-C Data
1879 -- 1889Huiwei Zhou, Yunlong Yang, Shixian Ning, Zhuang Liu 0001, Chengkun Lang, Yingyu Lin, Degen Huang. Combining Context and Knowledge Representations for Chemical-Disease Relation Extraction
1890 -- 1900HuiMin Luo, Jianxin Wang 0001, Min Li, Junwei Luo, Peng Ni, Kaijie Zhao, Fang-Xiang Wu, Yi Pan 0001. Computational Drug Repositioning with Random Walk on a Heterogeneous Network
1901 -- 1911Sabrina Stella, Roberto Chignola, Edoardo Milotti. Dynamical Detection of Boundaries and Cavities in Biophysical Cell-Based Simulations of Growing Tumor Tissues
1912 -- 1921Xingyu Cai, Abdullah-Al Mamun 0002, Sanguthevar Rajasekaran. Efficient Algorithms for Finding the Closest $l$l-Mers in Biological Data
1922 -- 1935Lun Hu, Xiaohui Yuan, Xing Liu, Shengwu Xiong, Xin Luo. Efficiently Detecting Protein Complexes from Protein Interaction Networks via Alternating Direction Method of Multipliers
1936 -- 1947Toktam Dehghani, Mahmoud Naghibzadeh, Javad Sadri. Enhancement of Protein β-Sheet Topology Prediction Using Maximum Weight Disjoint Path Cover
1948 -- 1957Xue Jiang, Han Zhang, Zhao Zhang, Xiongwen Quan. Flexible Non-Negative Matrix Factorization to Unravel Disease-Related Genes
1958 -- 1969Marianna Milano, Pietro Hiram Guzzi, Mario Cannataro. GLAlign: A Novel Algorithm for Local Network Alignment
1970 -- 1985Amit Paul 0001, Jaya Sil. Identification of Differentially Expressed Genes to Establish New Biomarker for Cancer Prediction
1986 -- 1996Xiaoke Hao, Xiaohui Yao, Shannon L. Risacher, Andrew J. Saykin, Jintai Yu, Huifu Wang, Lan Tan, Li Shen 0001, Daoqiang Zhang. Identifying Candidate Genetic Associations with MRI-Derived AD-Related ROI via Tree-Guided Sparse Learning
1997 -- 2008Anjing Fan, Haitao Wang, Hua Xiang, Xiufen Zou. Inferring Large-Scale Gene Regulatory Networks Using a Randomized Algorithm Based on Singular Value Decomposition
2009 -- 2022Ayan Chaudhury, Christopher Ward, Ali Talasaz, Alexander G. Ivanov, Mark Brophy, Bernard Grodzinski, Norman P. A. Hüner, Rajnikant V. Patel, John L. Barron. Machine Vision System for 3D Plant Phenotyping
2023 -- 2034Özkan U. Nalbantoglu, Khalid Sayood. MIMOSA: Algorithms for Microbial Profiling
2035 -- 2045Michail-Antisthenis I. Tsompanas, Andrew Adamatzky, Ioannis Ieropoulos, Neil Phillips, Georgios Ch. Sirakoulis, John Greenman. Modelling Microbial Fuel Cells Using Lattice Boltzmann Methods
2046 -- 2056Runtao Yang, Chengjin Zhang, Rui Gao, Lina Zhang, Qing Song 0002. Predicting FAD Interacting Residues with Feature Selection and Comprehensive Sequence Descriptors
2057 -- 2065V. K. Md. Aksam, V. M. Chandrasekaran 0001, Pandurangan Sundaramurthy. Protein Domain Level Cancer Drug Targets in the Network of MAPK Pathways
2066 -- 2077Ashis Kumer Biswas, Dong-Chul Kim, Mingon Kang, Jean X. Gao. Robust Inductive Matrix Completion Strategy to Explore Associations Between LincRNAs and Human Disease Phenotypes
2078 -- 2088Benjamin Wingfield, Sonya Coleman, T. M. McGinnity, Anthony J. Bjourson. Robust Microbial Markers for Non-Invasive Inflammatory Bowel Disease Identification
2089 -- 2100Rahul Kumar Sevakula, Vikas Singh, Nishchal K. Verma, Chandan Kumar, Yan Cui 0001. Transfer Learning for Molecular Cancer Classification Using Deep Neural Networks