Journal: IEEE/ACM Trans. Comput. Biology Bioinform.

Volume 17, Issue 3

726 -- 727Jie Zheng 0002, Jinyan Li, Yun Zheng. Guest Editorial for the 29th International Conference on Genome Informatics (GIW 2018)
728 -- 738Xingyu Liao, Min Li 0007, You Zou, Fang-Xiang Wu, Yi Pan 0001, Jianxin Wang. An Efficient Trimming Algorithm based on Multi-Feature Fusion Scoring Model for NGS Data
739 -- 747Shunfang Wang, Zicheng Cao, Mingyuan Li, Yaoting Yue. G-DipC: An Improved Feature Representation Method for Short Sequences to Predict the Type of Cargo in Cell-Penetrating Peptides
748 -- 757Yong Liu 0020, Min Wu 0008, Chenghao Liu, Xiaoli Li 0001, Jie Zheng 0002. 2MF: Predicting Synthetic Lethality in Human Cancers via Logistic Matrix Factorization
758 -- 768Junrong Song, Wei Peng, Feng Wang. An Entropy-Based Method for Identifying Mutual Exclusive Driver Genes in Cancer
769 -- 776Jiajie Peng, Linjiao Zhu, Yadong Wang, Jin Chen. Mining Relationships among Multiple Entities in Biological Networks
777 -- 787Heng Yao, Yunjia Shi, Jihong Guan, Shuigeng Zhou. Accurately Detecting Protein Complexes by Graph Embedding and Combining Functions with Interactions
788 -- 795Yuanyuan Ma, Xiaohua Hu, Tingting He, Xingpeng Jiang. Clustering and Integrating of Heterogeneous Microbiome Data by Joint Symmetric Nonnegative Matrix Factorization with Laplacian Regularization
796 -- 803Renjie Tan, Jixuan Wang, Xiaoliang Wu, Liran Juan, Tianjiao Zhang, Rui Ma, Qing Zhan, Tao Wang, Shuilin Jin, Qinghua Jiang, Yadong Wang. ERDS-Exome: A Hybrid Approach for Copy Number Variant Detection from Whole-Exome Sequencing Data
804 -- 816Shaoliang Peng, Xiaoyu Zhang, Wenhe Su, Dong Dong, Yutong Lu, Xiangke Liao, Kai Lu, Canqun Yang, Jie Liu 0002, Weiliang Zhu, Dongqing Wei. High-Scalable Collaborated Parallel Framework for Large-Scale Molecular Dynamic Simulation on Tianhe-2 Supercomputer
817 -- 827Min Li 0007, Xiangmao Meng, Ruiqing Zheng, Fang-Xiang Wu, Yaohang Li, Yi Pan 0001, Jianxin Wang. Identification of Protein Complexes by Using a Spatial and Temporal Active Protein Interaction Network
828 -- 840Mohammad Arifur Rahman, Nathan Lapierre, Huzefa Rangwala. Phenotype Prediction from Metagenomic Data Using Clustering and Assembly with Multiple Instance Learning (CAMIL)
841 -- 846Lishuang Li, Yuxin Jiang. Integrating Language Model and Reading Control Gate in BLSTM-CRF for Biomedical Named Entity Recognition
847 -- 857Binbin Wu, Min Li 0007, Xingyu Liao, Junwei Luo, Fang-Xiang Wu, Yi Pan 0001, Jianxin Wang. MEC: Misassembly Error Correction in Contigs based on Distribution of Paired-End Reads and Statistics of GC-contents
858 -- 867Huiru Zheng, Haiying Wang 0001, Richard J. Dewhurst, Rainer Roehe. Improving the Inference of Co-Occurrence Networks in the Bovine Rumen Microbiome
868 -- 876Fatima Zare, Sardar Ansari, Kayvan Najarian, Sheida Nabavi. Preprocessing Sequence Coverage Data for More Precise Detection of Copy Number Variations
877 -- 886Junwei Luo, Jianxin Wang, Juan Shang, HuiMin Luo, Min Li 0007, Fang-Xiang Wu, Yi Pan 0001. GapReduce: A Gap Filling Algorithm Based on Partitioned Read Sets
887 -- 898Haigen Hu, Qiu Guan, Shengyong Chen, Zhiwei Ji, Yao Lin. Detection and Recognition for Life State of Cell Cancer Using Two-Stage Cascade CNNs
899 -- 905Yuansheng Liu, Chaowang Lan, Michael Blumenstein, Jinyan Li. Bi-Level Error Correction for PacBio Long Reads
906 -- 915Peng Ni, Jianxin Wang, Ping Zhong 0002, Yaohang Li, Fang-Xiang Wu, Yi Pan 0001. Constructing Disease Similarity Networks Based on Disease Module Theory
916 -- 929Zhi-Zhong Chen, Youta Harada, Yuna Nakamura, Lusheng Wang 0001. Faster Exact Computation of rSPR Distance via Better Approximation
930 -- 937Zaobo He, Jiguo Yu, Ji Li 0007, Qilong Han, Guangchun Luo, Yingshu Li. Inference Attacks and Controls on Genotypes and Phenotypes for Individual Genomic Data
938 -- 948Jin Zhao, Haodi Feng, Daming Zhu, Chi Zhang, Ying Xu. IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads
949 -- 958Jingsong Zhang, Jianmei Guo, Ming Zhang, Xiangtian Yu, Xiaoqing Yu, Weifeng Guo, Tao Zeng, Luonan Chen. Efficient Mining Multi-Mers in a Variety of Biological Sequences
959 -- 971Fatima Boukari, Sokratis Makrogiannis. Automated Cell Tracking Using Motion Prediction-Based Matching and Event Handling
972 -- 980Lei Wang, Zhu-Hong You, De-Shuang Huang, Fengfeng Zhou. Combining High Speed ELM Learning with a Deep Convolutional Neural Network Feature Encoding for Predicting Protein-RNA Interactions
981 -- 989Qiwen Kang, Neil Moore, Christopher L. Schardl, Ruriko Yoshida. CURatio: Genome-Wide Phylogenomic Analysis Method Using Ratios of Total Branch Lengths
990 -- 998Sarawoot Som-In, Warangkhana Kimpan. Enhancing of Particle Swarm Optimization Based Method for Multiple Motifs Detection in DNA Sequences Collections
999 -- 1009Somayeh Bakhteh, Alireza Ghaffari Hadigheh, Nader Chaparzadeh. Identification of Minimum Set of Master Regulatory Genes in Gene Regulatory Networks
1010 -- 1018Haswanth Vundavilli, Aniruddha Datta, Chao Sima, Jianping Hua, Rosana Lopes, Michael L. Bittner. In Silico Design and Experimental Validation of Combination Therapy for Pancreatic Cancer
1019 -- 1031Ping Xuan, Tonghui Shen, Xiao Wang, Tiangang Zhang, Weixiong Zhang. Inferring Disease-Associated microRNAs in Heterogeneous Networks with Node Attributes
1032 -- 1041Hui Jiang, Jianxin Wang, Min Li 0007, Wei Lan, Fang-Xiang Wu, Yi Pan 0001. miRTRS: A Recommendation Algorithm for Predicting miRNA Targets
1042 -- 1055Ayan Chaudhury, John L. Barron. Plant Species Identification from Occluded Leaf Images
1056 -- 1067Mustafa Alshawaqfeh, Ahmad Al Kawam, Erchin Serpedin, Aniruddha Datta. Robust Recurrent CNV Detection in the Presence of Inter-Subject Variability
1068 -- 1081Gui-jun Zhang, Lai-Fa Ma, Xiao-Qi Wang, Xiaogen Zhou. Secondary Structure and Contact Guided Differential Evolution for Protein Structure Prediction
1082 -- 1091Xiguo Yuan, Meihong Gao, Jun Bai, Junbo Duan. SVSR: A Program to Simulate Structural Variations and Generate Sequencing Reads for Multiple Platforms
1092 -- 0Paola Lecca, Angela Re. Correction to "A Reaction-Based Model of the State Space of Chemical Reaction Systems Enables Efficient Simulations"