Journal: IEEE/ACM Trans. Comput. Biology Bioinform.

Volume 18, Issue 2

396 -- 404Titinunt Kitrungrotsakul, Xian-Hua Han, Yutaro Iwamoto, Satoko Takemoto, Hideo Yokota, Sari Ipponjima, Tomomi Nemoto, Wei Xiong 0001, Yen-Wei Chen 0001. A Cascade of 2.5D CNN and Bidirectional CLSTM Network for Mitotic Cell Detection in 4D Microscopy Image
405 -- 415Wen Zhang 0008, Zhishuai Li, Wenzheng Guo, Weitai Yang, Feng Huang. A Fast Linear Neighborhood Similarity-Based Network Link Inference Method to Predict MicroRNA-Disease Associations
416 -- 430Biing-Feng Wang, Krister M. Swenson. A Faster Algorithm for Computing the Kernel of Maximum Agreement Subtrees
431 -- 442Yunpei Xu, Hong-Dong Li, Yi Pan 0001, Feng Luo, Fang-Xiang Wu, Jianxin Wang 0001. A Gene Rank Based Approach for Single Cell Similarity Assessment and Clustering
443 -- 454Sahar Araghi, Thanh Nguyen 0004. A Hybrid Supervised Approach to Human Population Identification Using Genomics Data
455 -- 462Hsin-Hung Chou, Ching-Tien Hsu, Li-Hsuan Chen, Yue-Cheng Lin, Sun-Yuan Hsieh. A Novel Branch-and-Bound Algorithm for the Protein Folding Problem in the 3D HP Model
463 -- 471HuiMin Luo, Jianxin Wang 0001, Cheng Yan, Min Li 0007, Fang-Xiang Wu, Yi Pan 0001. A Novel Drug Repositioning Approach Based on Collaborative Metric Learning
472 -- 488Seyedeh Shaghayegh Sadeghi, Mohammad Reza Keyvanpour. An Analytical Review of Computational Drug Repurposing
489 -- 499Anupam Banerjee, Kuntal Pal, Pralay Mitra. An Evolutionary Profile Guided Greedy Parallel Replica-Exchange Monte Carlo Search Algorithm for Rapid Convergence in Protein Design
500 -- 511Wanrong Gu, Ziye Zhang, Xianfen Xie, Yichen He. An Improved Muti-Task Learning Algorithm for Analyzing Cancer Survival Data
512 -- 524Kevin Chow, Aisharjya Sarkar, Rasha Elhesha, Pietro Cinaglia, Ahmet Ay, Tamer Kahveci. ANCA: Alignment-Based Network Construction Algorithm
525 -- 538Miguel González, Cristina Gutiérrez, Rodrigo Martínez. Bayesian Inference in Y-Linked Two-Sex Branching Processes with Mutations: ABC Approach
539 -- 549Xiguo Yuan, Jiaao Yu, Jianing Xi, Liying Yang 0001, Junliang Shang, Zhe Li, Junbo Duan. CNV_IFTV: An Isolation Forest and Total Variation-Based Detection of CNVs from Short-Read Sequencing Data
550 -- 561Sourav Biswas, Sumanta Ray, Sanghamitra Bandyopadhyay. Colored Network Motif Analysis by Dynamic Programming Approach: An Application in Host Pathogen Interaction Network
562 -- 574Jacob C. Kimmel, Andrew S. Brack, Wallace F. Marshall. Deep Convolutional and Recurrent Neural Networks for Cell Motility Discrimination and Prediction
575 -- 582Min Li 0007, Yake Wang, Ruiqing Zheng, Xinghua Shi, Yaohang Li, Fang-Xiang Wu, Jianxin Wang 0001. DeepDSC: A Deep Learning Method to Predict Drug Sensitivity of Cancer Cell Lines
583 -- 595Jingrong Zhang, Zihao Wang, Zhiyong Liu 0002, Fa Zhang 0001. Improve the Resolution and Parallel Performance of the Three-Dimensional Refine Algorithm in RELION Using CUDA and MPI
596 -- 610Muhammad Awais, Waqar Hussain, Yaser Daanial Khan, Nouman Rasool, Sher Afzal Khan, Kuo-Chen Chou. iPhosH-PseAAC: Identify Phosphohistidine Sites in Proteins by Blending Statistical Moments and Position Relative Features According to the Chou's 5-Step Rule and General Pseudo Amino Acid Composition
611 -- 620Cheng Yan, Guihua Duan, Fang-Xiang Wu, Yi Pan 0001, Jianxin Wang 0001. MCHMDA: Predicting Microbe-Disease Associations Based on Similarities and Low-Rank Matrix Completion
621 -- 632Cheng Peng, Xinyu Wu, Wen Yuan, Xinran Zhang, Yu Zhang, Ying Li 0004. MGRFE: Multilayer Recursive Feature Elimination Based on an Embedded Genetic Algorithm for Cancer Classification
633 -- 643Alexandre Gondeau, Zahia Aouabed, Mohamed Hijri, Pedro R. Peres-Neto, Vladimir Makarenkov. Object Weighting: A New Clustering Approach to Deal with Outliers and Cluster Overlap in Computational Biology
644 -- 655Alireza Karbalayghareh, Xiaoning Qian, Edward R. Dougherty. Optimal Bayesian Transfer Learning for Count Data
656 -- 666Andrés F. López-Lopera, Nicolas Durrande, Mauricio A. Álvarez. Physically-Inspired Gaussian Process Models for Post-Transcriptional Regulation in Drosophila
667 -- 676Qinhu Zhang, Zhen Shen, De-Shuang Huang. Predicting in-vitro Transcription Factor Binding Sites Using DNA Sequence + Shape
677 -- 685Jingxuan Qiu, Tianyi Qiu, Qingli Dong, Dongpo Xu, Xiang Wang, Qi Zhang, Jing Pan, Qing Liu. Predicting the Antigenic Relationship of Foot-and-Mouth Disease Virus for Vaccine Selection Through a Computational Model
686 -- 696Chen Zhang, Yanrui Ding. Probing the Relation Between Community Evolution in Dynamic Residue Interaction Networks and Xylanase Thermostability
697 -- 707Gui-jun Zhang, Tengyu Xie, Xiao-gen Zhou, Liu-Jing Wang, Jun Hu 0010. Protein Structure Prediction Using Population-Based Algorithm Guided by Information Entropy
708 -- 717Saikat Biswas, Pabitra Mitra, Krothapalli Sreenivasa Rao. Relation Prediction of Co-Morbid Diseases Using Knowledge Graph Completion
718 -- 730Xiaona Song, Mi Wang, Shuai Song, Choon Ki Ahn. Sampled-Data State Estimation of Reaction Diffusion Genetic Regulatory Networks via Space-Dividing Approaches
731 -- 744Guimu Guo, Hongzhi Chen, Da Yan 0001, James Cheng, Jake Y. Chen, Zechen Chong. Scalable De Novo Genome Assembly Using a Pregel-Like Graph-Parallel System
745 -- 758Md Ekramul Hossain, Arif Khan 0001, Mohammad Ali Moni, Shahadat Uddin. Use of Electronic Health Data for Disease Prediction: A Comprehensive Literature Review
759 -- 764Pratik Singh, Gayadhar Pradhan. A New ECG Denoising Framework Using Generative Adversarial Network
765 -- 772Md Anisur Rahman, Li-minn Ang, Kah Phooi Seng. Data Convexity and Parameter Independent Clustering for Biomedical Datasets
773 -- 776Weiyang Chen, Weiwei Li. Definition and Usage of Texture Feature for Biological Sequence
777 -- 783Sambriddhi Mainali, Fredy A. Colorado, Max H. Garzon. Foretelling the Phenotype of a Genomic Sequence
784 -- 789Linyu Wang, Shaoge Zheng, Hao Zhang 0064, Zhiyang Qiu, Xiaodan Zhong, Haiming Liu, Yuanning Liu. ncRFP: A Novel end-to-end Method for Non-Coding RNAs Family Prediction Based on Deep Learning
790 -- 796Aman Chawla, Salvatore D. Morgera, Arthur Snider. On Axon Interaction and Its Role in Neurological Networks
797 -- 803Jia Zhu, Zetao Zheng, Min Yang 0007, Gabriel Pui Cheong Fung, Changqin Huang. Protein Complexes Detection Based on Semi-Supervised Network Embedding Model
804 -- 808Robert Penchovsky, Nikolet Pavlova, Dimitrios Kaloudas. RSwitch: A Novel Bioinformatics Database on Riboswitches as Antibacterial Drug Targets