| 321 | -- | 322 | Rita Casadio. Guest Editor s Introduction to the Special Issue on Computational Biology and Bioinformatics -- Part 1 |
| 323 | -- | 333 | Sagi Snir, Satish Rao. Using Max Cut to Enhance Rooted Trees Consistency |
| 334 | -- | 346 | Ganeshkumar Ganapathy, Barbara Goodson, Robert K. Jansen, Hai-son Le, Vijaya Ramachandran, Tandy Warnow. Pattern Identification in Biogeography |
| 347 | -- | 359 | Sebastian Wernicke. Efficient Detection of Network Motifs |
| 360 | -- | 368 | Vincent Lacroix, Cristina G. Fernandes, Marie-France Sagot. Motif Search in Graphs: Application to Metabolic Networks |
| 369 | -- | 379 | Isaac Elias, Tzvika Hartman. A 1.375-Approximation Algorithm for Sorting by Transpositions |
| 380 | -- | 394 | Anthony Labarre. New Bounds and Tractable Instances for the Transposition Distance |
| 395 | -- | 407 | Michael Sammeth, Jens Stoye. Comparing Tandem Repeats with Duplications and Excisions of Variable Degree |
| 408 | -- | 422 | Yonatan Bilu, Pankaj K. Agarwal, Rachel Kolodny. Faster Algorithms for Optimal Multiple Sequence Alignment Based on Pairwise Comparisons |
| 423 | -- | 432 | Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai. Efficient Parameterized Algorithms for Biopolymer Structure-Sequence Alignment |