| 481 | -- | 0 | Dan Gusfield. EIC Editorial |
| 482 | -- | 483 | Raffaele Giancarlo, Sridhar Hannenhalli. Guest Editors Introduction to the Special Section on Algorithms in Bioinformatics |
| 484 | -- | 491 | Jieun K. Jeong, Piotr Berman, Teresa M. Przytycka. Improving Strand Pairing Prediction through Exploring Folding Cooperativity |
| 492 | -- | 502 | Loredana M. Genovese, Filippo Geraci, Marco Pellegrini. SpeedHap: An Accurate Heuristic for the Single Individual SNP Haplotyping Problem with Many Gaps, High Reading Error Rate andLow Coverage |
| 503 | -- | 513 | Antoni Lozano, Ron Y. Pinter, Oleg Rokhlenko, Gabriel Valiente, Michal Ziv-Ukelson. Seeded Tree Alignment |
| 514 | -- | 524 | Mukul S. Bansal, Oliver Eulenstein. An Omega(n^2/ log n) Speed-Up of TBR Heuristics for the Gene-Duplication Problem |
| 525 | -- | 533 | Xueyi Wang, Jack Snoeyink. Defining and Computing Optimum RMSD for Gapped and Weighted Multiple-Structure Alignment |
| 534 | -- | 545 | Peggy Yao, Ankur Dhanik, Nathan Marz, Ryan Propper, Charles Kou, Guanfeng Liu, Henry van den Bedem, Jean-Claude Latombe, Inbal Halperin-Landsberg, Russ B. Altman. Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops |
| 546 | -- | 556 | Eagu Kim, John D. Kececioglu. Learning Scoring Schemes for Sequence Alignment from Partial Examples |
| 557 | -- | 567 | Alexander Schliep, Roland Krause. Efficient Algorithms for the Computational Design of Optimal Tiling Arrays |
| 568 | -- | 582 | Zeyun Yu, Chandrajit L. Bajaj. Computational Approaches for Automatic Structural Analysis of Large Biomolecular Complexes |
| 583 | -- | 593 | Yann Christinat, Bernd Wachmann, Lei Zhang. Gene Expression Data Analysis Using a Novel Approach to Biclustering Combining Discrete and Continuous Data |
| 594 | -- | 617 | Vincent Lacroix, Ludovic Cottret, Patricia Thébault, Marie-France Sagot. An Introduction to Metabolic Networks and Their Structural Analysis |
| 618 | -- | 629 | Ravi Vijaya Satya, Amar Mukherjee. The Undirected Incomplete Perfect Phylogeny Problem |
| 630 | -- | 638 | Cedric Gondro, Brian P. Kinghorn. Optimization of cDNA Microarray Experimental Designs Using an Evolutionary Algorithm |