| 2 | -- | 11 | Ester DÃaz, Guillermo Ayala, Maria Diaz-Fernandez, Liang Gong, Derek Toomre. Automatic Detection of Large Dense-Core Vesicles in Secretory Cells and Statistical Analysis of Their Intracellular Distribution |
| 12 | -- | 24 | Carol Lushbough, Michael K. Bergman, Carolyn J. Lawrence, Douglas Jennewein, Volker Brendel. BioExtract Server - An Integrated Workflow-Enabling System to Access and Analyze Heterogeneous, Distributed Biomolecular Data |
| 25 | -- | 36 | Shenghuo Zhu, Dingding Wang, Kai Yu, Tao Li, Yihong Gong. Feature Selection for Gene Expression Using Model-Based Entropy |
| 37 | -- | 49 | Petri Pehkonen, Garry Wong, Petri Törönen. Heuristic Bayesian Segmentation for Discovery of Coexpressed Genes within Genomic Regions |
| 50 | -- | 63 | Rafal Kustra, Adam Zagdanski. Data-Fusion in Clustering Microarray Data: Balancing Discovery and Interpretability |
| 64 | -- | 79 | Oliver Rübel, Gunther H. Weber, Min-Yu Huang, E. Wes Bethel, Mark D. Biggin, Charless C. Fowlkes, Cris L. Luengo Hendriks, Soile V. E. Keränen, Michael B. Eisen, David W. Knowles, Jitendra Malik, Hans Hagen, Bernd Hamann. Integrating Data Clustering and Visualization for the Analysis of 3D Gene Expression Data |
| 80 | -- | 90 | Ju Han, Hang Chang, Kumari L. Andarawewa, Paul Yaswen, Mary Helen Barcellos-Hoff, Bahram Parvin. Multidimensional Profiling of Cell Surface Proteins and Nuclear Markers |
| 91 | -- | 99 | Bogdan Done, Purvesh Khatri, Arina Done, Sorin Draghici. Predicting Novel Human Gene Ontology Annotations Using Semantic Analysis |
| 100 | -- | 107 | Zhenqiu Liu, Shili Lin, Ming Tan. Sparse Support Vector Machines with L_{p} Penalty for Biomarker Identification |
| 108 | -- | 117 | Yukyee Leung, Yeung Sam Hung. A Multiple-Filter-Multiple-Wrapper Approach to Gene Selection and Microarray Data Classification |
| 118 | -- | 125 | Theodore J. Perkins, Michael T. Hallett. A Trade-Off between Sample Complexity and Computational Complexity in Learning Boolean Networks from Time-Series Data |
| 126 | -- | 137 | Richard Pelikan, Milos Hauskrecht. Efficient Peak-Labeling Algorithms for Whole-Sample Mass Spectrometry Proteomics |
| 138 | -- | 152 | Pritha Mahata. Exploratory Consensus of Hierarchical Clusterings for Melanoma and Breast Cancer |
| 153 | -- | 165 | Sara C. Madeira, Miguel C. Teixeira, Isabel Sá-Correia, Arlindo L. Oliveira. Identification of Regulatory Modules in Time Series Gene Expression Data Using a Linear Time Biclustering Algorithm |
| 166 | -- | 171 | Elchanan Mossel, Sébastien Roch. Incomplete Lineage Sorting: Consistent Phylogeny Estimation from Multiple Loci |
| 172 | -- | 182 | Alex Alves Freitas, Daniela Wieser, Rolf Apweiler. On the Importance of Comprehensible Classification Models for Protein Function Prediction |
| 183 | -- | 187 | Noga Alon, Benny Chor, Fabio Pardi, Anat Rapoport. Approximate Maximum Parsimony and Ancestral Maximum Likelihood |