| 577 | -- | 578 | Ion Mandou, Giri Narasimhan, Yi Pan, Yanqing Zhang. Guest Editors Introduction to the Special Section on Bioinformatics Research and Applications |
| 579 | -- | 587 | Adriana Muñoz, David Sankoff. Rearrangement Phylogeny of Genomes in Contig Form |
| 588 | -- | 597 | Balaji Venkatachalam, Jim Apple, Katherine St. John, Dan Gusfield. Untangling Tanglegrams: Comparing Trees by Their Drawings |
| 598 | -- | 610 | Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Yuri Pirola, Romeo Rizzi. Pure Parsimony Xor Haplotyping |
| 611 | -- | 618 | Yufeng Wu. Exact Computation of Coalescent Likelihood for Panmictic and Subdivided Populations under the Infinite Sites Model |
| 619 | -- | 627 | Sanguthevar Rajasekaran, Sahar Al Seesi, Reda A. Ammar. Improved Algorithms for Parsing ESLTAGs: A Grammatical Model Suitable for RNA Pseudoknots |
| 628 | -- | 635 | Guillaume Blin, Florian Sikora, Stéphane Vialette. Querying Graphs in Protein-Protein Interactions Networks Using Feedback Vertex Set |
| 636 | -- | 646 | Qiang Cheng. A Sparse Learning Machine for High-Dimensional Data with Application to Microarray Gene Analysis |
| 647 | -- | 653 | William B. Langdon, Graham J. G. Upton, Renata da Silva Camargo, Andrew P. Harrison. A Survey of Spatial Defects in Homo Sapiens Affymetrix GeneChips |
| 654 | -- | 668 | Gang Li, Tak-Ming Chan, Kwong-Sak Leung, Kin-Hong Lee. A Cluster Refinement Algorithm for Motif Discovery |
| 669 | -- | 680 | Jianjun Zhou, Jörg Sander, Zhipeng Cai, Lusheng Wang, Guohui Lin. Finding the Nearest Neighbors in Biological Databases Using Less Distance Computations |
| 681 | -- | 687 | Liang-Tsung Huang, Lien Fu Lai, M. Michael Gromiha. Human-Readable Rule Generator for Integrating Amino Acid Sequence Information and Stability of Mutant Proteins |
| 688 | -- | 703 | Christophe Godin, Pascal Ferraro. Quantifying the Degree of Self-Nestedness of Trees: Application to the Structural Analysis of Plants |
| 704 | -- | 718 | Sagi Snir, Satish Rao. Quartets MaxCut: A Divide and Conquer Quartets Algorithm |
| 719 | -- | 726 | Xin Lu, Anthony Gamst, Ronghui Xu. RDCurve: A Nonparametric Method to Evaluate the Stability of Ranking Procedures |
| 727 | -- | 740 | Herbert H. Tsang, Kay C. Wiese. SARNA-Predict: Accuracy Improvement of RNA Secondary Structure Prediction Using Permutation-Based Simulated Annealing |
| 741 | -- | 751 | Liwen You, Vladimir Brusic, Marcus Gallagher, Mikael Bodén. Using Gaussian Process with Test Rejection to Detect T-Cell Epitopes in Pathogen Genomes |
| 752 | -- | 762 | Alberto Apostolico, Matteo Comin, Laxmi Parida. VARUN: Discovering Extensible Motifs under Saturation Constraints |
| 763 | -- | 767 | István Miklós, Bence Melykuti, Krister Swenson. The Metropolized Partial Importance Sampling MCMC Mixes Slowly on Minimum Reversal Rearrangement Paths |