| 289 | -- | 291 | Marie-France Sagot. EIC Editorial |
| 292 | -- | 293 | Fang-Xiang Wu, Jun Huan. Guest Editorial: Special Focus on Bioinformatics and Systems Biology |
| 294 | -- | 307 | Yanpeng Li, Xiaohua Hu, Hongfei Lin, Zhiahi Yang. A Framework for Semisupervised Feature Generation and Its Applications in Biomedical Literature Mining |
| 308 | -- | 315 | Jong Cheol Jeong, Xiaotong Lin, Xue-wen Chen. On Position-Specific Scoring Matrix for Protein Function Prediction |
| 316 | -- | 325 | Sangyoon Oh, Min Su Lee, Byoung-Tak Zhang. Ensemble Learning with Active Example Selection for Imbalanced Biomedical Data Classification |
| 326 | -- | 334 | Zina M. Ibrahim, Alioune Ngom, Ahmed Y. Tawfik. Using Qualitative Probability in Reverse-Engineering Gene Regulatory Networks |
| 335 | -- | 341 | Amit Sabnis, Robert W. Harrison. A Continuous-Time, Discrete-State Method for Simulating the Dynamics of Biochemical Systems |
| 342 | -- | 352 | Douglas W. Raiford, Dan E. Krane, Travis E. Doom, Michael L. Raymer. A Genetic Optimization Approach for Isolating Translational Efficiency Bias |
| 353 | -- | 367 | Ramesh Ram, Madhu Chetty. A Markov-Blanket-Based Model for Gene Regulatory Network Inference |
| 368 | -- | 380 | Zengyou He, Can Yang, Weichuan Yu. A Partial Set Covering Model for Protein Mixture Identification Using Mass Spectrometry Data |
| 381 | -- | 394 | Yonghui Wu, Timothy J. Close, Stefano Lonardi. Accurate Construction of Consensus Genetic Maps via Integer Linear Programming |
| 395 | -- | 409 | Zafer Aydin, Yucel Altunbasak, Hakan Erdogan. Bayesian Models and Algorithms for Protein β-Sheet Prediction |
| 410 | -- | 427 | Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente. Comparison of Galled Trees |
| 428 | -- | 440 | Kwong-Sak Leung, Kin-Hong Lee, Jin Feng Wang, Eddie Y. T. Ng, Henry L. Y. Chan, Stephen Kwok-Wing Tsui, Tony Shu Kam Mok, Pete Chi-Hang Tse, Joseph J. Y. Sung. Data Mining on DNA Sequences of Hepatitis B Virus |
| 441 | -- | 451 | Tien-ho Lin, Robert F. Murphy, Ziv Bar-Joseph. Discriminative Motif Finding for Predicting Protein Subcellular Localization |
| 452 | -- | 463 | Saras Saraswathi, Suresh Sundaram, Narasimhan Sundararajan, Michael Zimmermann, Marit Nilsen-Hamilton. ICGA-PSO-ELM Approach for Accurate Multiclass Cancer Classification Resulting in Reduced Gene Sets in Which Genes Encoding Secreted Proteins Are Highly Represented |
| 464 | -- | 475 | Itziar Irigoien, Sergi Vives, Concepcion Arenas. Microarray Time Course Experiments: Finding Profiles |
| 476 | -- | 486 | Qiwen Dong, Shuigeng Zhou. Novel Nonlinear Knowledge-Based Mean Force Potentials Based on Machine Learning |
| 487 | -- | 498 | Sébastien Loriot, Sushant Sachdeva, Karine Bastard, Chantal Prévost, Frédéric Cazals. On the Characterization and Selection of Diverse Conformational Ensembles with Applications to Flexible Docking |
| 499 | -- | 516 | Robert Giegerich, Christian Höner zu Siederdissen. Semantics and Ambiguity of Stochastic RNA Family Models |
| 517 | -- | 535 | Ali Tofigh, Michael T. Hallett, Jens Lagergren. Simultaneous Identification of Duplications and Lateral Gene Transfers |
| 536 | -- | 550 | Michael D. Lieberman, Sima Taheri, Huimin Guo, Fatemeh Mirrashed, Inbal Yahav, Aleks Aris, Ben Shneiderman. Visual Exploration across Biomedical Databases |
| 551 | -- | 556 | Glenn Hickey, Mathieu Blanchette, Paz Carmi, Anil Maheshwari, Norbert Zeh. An Approximation Algorithm for the Noah s Ark Problem with Random Feature Loss |
| 557 | -- | 563 | Juan Cortés, Sophie Barbe, Monique Erard, Thierry Siméon. Encoding Molecular Motions in Voxel Maps |
| 564 | -- | 569 | J. Rocha. Graph Comparison by Log-Odds Score Matrices with Application to Protein Topology Analysis |
| 570 | -- | 576 | André Fujita, João Ricardo Sato, Marcos Angelo Almeida Demasi, Rui Yamaguchi, Teppei Shimamura, Carlos Eduardo Ferreira, Mari Cleide Sogayar, Satoru Miyano. Inferring Contagion in Regulatory Networks |