| 1 | -- | 11 | Daniel DeBlasio, Jocelyne Bruand, Shaojie Zhang. A Memory Efficient Method for Structure-Based RNA Multiple Alignment |
| 12 | -- | 25 | Yuri Pirola, Paola Bonizzoni, Tao Jiang. An Efficient Algorithm for Haplotype Inference on Pedigrees with Recombinations and Mutations |
| 26 | -- | 39 | Jean-Philippe Doyon, Sylvie Hamel, Cedric Chauve. An Efficient Method for Exploring the Space of Gene Tree/Species Tree Reconciliations in a Probabilistic Framework |
| 40 | -- | 51 | Chong Wang, Peter Beyerlein, Heike Pospisil, Antje Krause, Chris D. Nugent, Werner Dubitzky. An Efficient Method for Modeling Kinetic Behavior of Channel Proteins in Cardiomyocytes |
| 52 | -- | 65 | Bane V. Vasic, Vida Ravanmehr, Anantha Raman Krishnan. An Information Theoretic Approach to Constructing Robust Boolean Gene Regulatory Networks |
| 66 | -- | 78 | Piraveenan Mahendra, Mikhail Prokopenko, Albert Y. Zomaya. Assortative Mixing in Directed Biological Networks |
| 79 | -- | 87 | Raymond H. Chan, Tony H. Chan, Hau Man Yeung, Roger Wei Wang. Composition Vector Method Based on Maximum Entropy Principle for Sequence Comparison |
| 88 | -- | 97 | José Ramón Quevedo, Antonio Bahamonde, Miguel Pérez-Enciso, Oscar Luaces. Disease Liability Prediction from Large Scale Genotyping Data Using Classifiers with a Reject Option |
| 98 | -- | 112 | Ying-Xin Li, Shuiwang Ji, Sudhir Kumar, Jieping Ye, Zhi-Hua Zhou. Drosophila Gene Expression Pattern Annotation through Multi-Instance Multi-Label Learning |
| 113 | -- | 122 | David R. Paoletti, Dan E. Krane, Travis E. Doom, Michael L. Raymer. Inferring the Number of Contributors to Mixed DNA Profiles |
| 123 | -- | 136 | Xiaoning Qian, Edward R. Dougherty. Intervention in Gene Regulatory Networks via Phenotypically Constrained Control Policies Based on Long-Run Behavior |
| 137 | -- | 149 | Shanika Kuruppu, Bryan Beresford-Smith, Thomas C. Conway, Justin Zobel. Iterative Dictionary Construction for Compression of Large DNA Data Sets |
| 150 | -- | 160 | Damian Bogdanowicz, Krzysztof Giaro. Matching Split Distance for Unrooted Binary Phylogenetic Trees |
| 161 | -- | 168 | Thomas K. F. Wong, Y. S. Chiu, Tak Wah Lam, Siu-Ming Yiu. Memory Efficient Algorithms for Structural Alignment of RNAs with Pseudoknots |
| 169 | -- | 184 | Arthur W. Mahoney, Gregory J. Podgorski, Nicholas S. Flann. Multiobjective Optimization Based-Approach for Discovering Novel Cancer Therapies |
| 185 | -- | 202 | Jianyong Sun, Jonathan M. Garibaldi, Charlie Hodgman. Parameter Estimation Using Metaheuristics in Systems Biology: A Comprehensive Review |
| 203 | -- | 213 | Andrea Passerini, Marco Lippi, Paolo Frasconi. Predicting Metal-Binding Sites from Protein Sequence |
| 214 | -- | 227 | Shahid H. Bokhari, Laura W. Pomeroy, Daniel Janies. Reassortment Networks and the Evolution of Pandemic H1N1 Swine-Origin Influenza |
| 228 | -- | 239 | Lingyu Ma, Marco Reisert, Hans Burkhardt. RENNSH: A Novel ά-Helix Identification Approach for Intermediate Resolution Electron Density Maps |
| 240 | -- | 248 | Shuai Cheng Li, Dongbo Bu, Ming Li. Residues with Similar Hexagon Neighborhoods Share Similar Side-Chain Conformations |
| 249 | -- | 261 | Hong Sun, Ahmet Sacan, Hakan Ferhatosmanoglu, Yusu Wang. Smolign: A Spatial Motifs-Based Protein Multiple Structural Alignment Method |
| 262 | -- | 272 | Lei Yu, Yue Han, Michael E. Berens. Stable Gene Selection from Microarray Data via Sample Weighting |
| 273 | -- | 285 | Maria Luisa Bonet, Simone Linz, Katherine St. John. The Complexity of Finding Multiple Solutions to Betweenness and Quartet Compatibility |
| 294 | -- | 304 | Yang Xiang, Philip R. O. Payne, Kun Huang. Transactional Database Transformation and Its Application in Prioritizing Human Disease Genes |
| 305 | -- | 310 | Kyle H. Ambert, Aaron M. Cohen. k-Information Gain Scaled Nearest Neighbors: A Novel Approach to Classifying Protein-Protein Interaction-Related Documents |
| 311 | -- | 315 | Yun Xu, Da Teng, Yiming Lei. MinePhos: A Literature Mining System for Protein Phoshphorylation Information Extraction |