| 641 | -- | 642 | Tommaso Mazza. High Performance Computational Systems Biology |
| 643 | -- | 654 | Mark Burkitt, Dawn C. Walker, Daniela M. Romano, Alireza Fazeli. Constructing Complex 3D Biological Environments from Medical Imaging Using High Performance Computing |
| 655 | -- | 667 | Lorenzo Dematté. Smoldyn on Graphics Processing Units: Massively Parallel Brownian Dynamics Simulations |
| 668 | -- | 678 | Vincenzo Belcastro, Francesco Gregoretti, Velia Siciliano, Michele Santoro, Giovanni D'Angelo, Gennaro Oliva, Diego di Bernardo. Reverse Engineering and Analysis of Genome-Wide Gene Regulatory Networks from Gene Expression Profiles Using High-Performance Computing |
| 679 | -- | 692 | Alhadi Bustamam, Kevin Burrage, Nicholas A. Hamilton. Fast Parallel Markov Clustering in Bioinformatics Using Massively Parallel Computing on GPU with CUDA and ELLPACK-R Sparse Format |
| 693 | -- | 705 | Jiri Barnat, Lubos Brim, Adam Krejci, Adam Streck, David Safránek, Martin Vejnar, Tomas Vejpustek. On Parameter Synthesis by Parallel Model Checking |
| 706 | -- | 716 | Georgina Stegmayer, Diego H. Milone, Laura Kamenetzky, Mariana G. Lopez, Fernando Carrari. A Biologically Inspired Validity Measure for Comparison of Clustering Methods over Metabolic Data Sets |
| 717 | -- | 730 | Clara Pizzuti, Simona E. Rombo. A Coclustering Approach for Mining Large Protein-Protein Interaction Networks |
| 731 | -- | 739 | Petros Kountouris, Michalis Agathocleous, Vasilis J. Promponas, Georgia Christodoulou, Simos Hadjicostas, Vassilis Vassiliades, Chris Christodoulou. A Comparative Study on Filtering Protein Secondary Structure Prediction |
| 740 | -- | 753 | Xiao-fei Zhang, Dao-Qing Dai. A Framework for Incorporating Functional Interrelationships into Protein Function Prediction Algorithms |
| 754 | -- | 764 | Alok Sharma, Seiya Imoto, Satoru Miyano. A Top-r Feature Selection Algorithm for Microarray Gene Expression Data |
| 765 | -- | 773 | Shuai Cheng Li, Dongbo Bu, Ming Li. Clustering 100, 000 Protein Structure Decoys in Minutes |
| 774 | -- | 787 | Yanni Sun, Jeremy Buhler, Cheng Yuan. Designing Filters for Fast-Known NcRNA Identification |
| 788 | -- | 798 | Milos Krejnik, Jirí Kléma. Empirical Evidence of the Applicability of Functional Clustering through Gene Expression Classification |
| 799 | -- | 808 | Giuliano Armano, Filippo Ledda. Exploiting Intrastructure Information for Secondary Structure Prediction with Multifaceted Pipelines |
| 809 | -- | 817 | Oliver Serang, William Stafford Noble. Faster Mass Spectrometry-Based Protein Inference: Junction Trees Are More Efficient than Sampling and Marginalization by Enumeration |
| 818 | -- | 827 | Hong Huang, Hailiang Feng. Gene Classification Using Parameter-Free Semi-Supervised Manifold Learning |
| 828 | -- | 836 | Peter Jarvis, Jeremy G. Sumner. Markov Invariants for Phylogenetic Rate Matrices Derived from Embedded Submodels |
| 837 | -- | 845 | Cheng-Hong Yang, Yu-Huei Cheng, Cheng-Huei Yang, Li-Yeh Chuang. Mutagenic Primer Design for Mismatch PCR-RFLP SNP Genotyping Using a Genetic Algorithm |
| 846 | -- | 856 | Mindaugas Norkus, Damien Fay, Mary J. Murphy, Frank Barry, Gearóid Ó Laighin, Liam Kilmartin. On the Application of Active Learning and Gaussian Processes in Postcryopreservation Cell Membrane Integrity Experiments |
| 857 | -- | 870 | Xiao-fei Zhang, Dao-Qing Dai, Xiao-Xin Li. Protein Complexes Discovery Based on Protein-Protein Interaction Data via a Regularized Sparse Generative Network Model |
| 871 | -- | 884 | Yong Zhang, Peng Li, Garng M. Huang. Quantifying Dynamic Stability of Genetic Memory Circuits |
| 885 | -- | 898 | Eugen Czeizler, Andrzej Mizera, Elena Czeizler, Ralph-Johan Back, John E. Eriksson, Ion Petre. Quantitative Analysis of the Self-Assembly Strategies of Intermediate Filaments from Tetrameric Vimentin |
| 899 | -- | 910 | Michael Mooney, Beth Wilmot, The Bipolar Genome Study, Shannon K. McWeeney. The GA and the GWAS: Using Genetic Algorithms to Search for Multilocus Associations |
| 911 | -- | 923 | Tommaso Mazza, Paolo Ballarini, Rosita Guido, Davide Prandi. The Relevance of Topology in Parallel Simulation of Biological Networks |
| 924 | -- | 933 | Debarka Sengupta, Ujjwal Maulik, Sanghamitra Bandyopadhyay. Weighted Markov Chain Based Aggregation of Biomolecule Orderings |
| 934 | -- | 939 | Italo Zoppis, Erica Gianazza, Massimiliano Borsani, Clizia Chinello, Veronica Mainini, Carmen Galbusera, Carlo Ferrarese, Gloria Galimberti, Alessandro Sorbi, Barbara Borroni, Fulvio Magni, Marco Antoniotti, Giancarlo Mauri. Mutual Information Optimization for Mass Spectra Data Alignment |
| 940 | -- | 941 | Denise Fagundes-Lima, Gerald Weber. Comment on "SCS: Signal, Context, and Structure Features for Genome-Wide Human Promoter Recognition" |