| 945 | -- | 946 | Luonan Chen, Michael K. Ng. Guest Editorial: Bioinformatics and Computational Systems Biology |
| 947 | -- | 954 | Yinyin Yuan, Christina Curtis, Carlos Caldas, Florian Markowetz. A Sparse Regulatory Network of Copy-Number Driven Gene Expression Reveals Putative Breast Cancer Oncogenes |
| 955 | -- | 965 | Li-Zhi Liu, Fang-Xiang Wu, Wen-Jun Zhang. Inference of Biological S-System Using the Separable Estimation Method and the Genetic Algorithm |
| 966 | -- | 972 | Shuichi Kawano, Teppei Shimamura, Atsushi Niida, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, Ryo Yoshida, Cristin G. Print, Satoru Miyano. Identifying Gene Pathways Associated with Cancer Characteristics via Sparse Statistical Methods |
| 973 | -- | 979 | Haseong Kim, Erol Gelenbe. Stochastic Gene Expression Modeling with Hill Function for Switch-Like Gene Responses |
| 980 | -- | 991 | Xin Chen, Xiaohua Hu, Tze Yee Lim, Xiajiong Shen, E. K. Park, Gail L. Rosen. Exploiting the Functional and Taxonomic Structure of Genomic Data by Probabilistic Topic Modeling |
| 992 | -- | 1001 | Alvaro J. González, Li Liao, Cathy H. Wu. Predicting Ligand Binding Residues and Functional Sites Using Multipositional Correlations with Graph Theoretic Clustering and Kernel CCA |
| 1002 | -- | 1003 | Jianer Chen, Alexander Zelikovsky. Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications |
| 1004 | -- | 1013 | Ruchi Chaudhary, J. Gordon Burleigh, David Fernández-Baca. Fast Local Search for Unrooted Robinson-Foulds Supertrees |
| 1014 | -- | 1022 | Yu Lin, Vaibhav Rajan, Bernard M. E. Moret. A Metric for Phylogenetic Trees Based on Matching |
| 1023 | -- | 1031 | Krister M. Swenson, Eric Chen, Nicholas D. Pattengale, David Sankoff. The Kernel of Maximum Agreement Subtrees |
| 1032 | -- | 1045 | Xiuwei Zhang, Bernard M. E. Moret. Refining Regulatory Networks through Phylogenetic Transfer of Information |
| 1046 | -- | 1058 | Luqman Hodgkinson, Richard M. Karp. Algorithms to Detect Multiprotein Modularity Conserved during Evolution |
| 1059 | -- | 1069 | Jonathan Q. Jiang, Lisa J. McQuay. Predicting Protein Function by Multi-Label Correlated Semi-Supervised Learning |
| 1070 | -- | 1080 | Jianxin Wang, Min Li, Huan Wang, Yi Pan. Identification of Essential Proteins Based on Edge Clustering Coefficient |
| 1081 | -- | 1090 | Woo-Hyuk Jang, Suk Hoon Jung, Dong-Soo Han. A Computational Model for Predicting Protein Interactions Based on Multidomain Collaboration |
| 1091 | -- | 1105 | Ickwon Choi, Michael W. Kattan, Brian J. Wells, Changhong Yu. A Hybrid Approach to Survival Model Building Using Integration of Clinical and Molecular Information in Censored Data |
| 1106 | -- | 1119 | Cosmin Lazar, Jonatan Taminau, Stijn Meganck, David Steenhoff, Alain Coletta, Colin Molter, Virginie de Schaetzen, Robin Duque, Hugues Bersini, Ann Nowé. A Survey on Filter Techniques for Feature Selection in Gene Expression Microarray Analysis |
| 1120 | -- | 1127 | Claudio Felicioli, Roberto Marangoni. BpMatch: An Efficient Algorithm for a Segmental Analysis of Genomic Sequences |
| 1128 | -- | 1138 | Stephen J. Willson. CSD Homomorphisms between Phylogenetic Networks |
| 1139 | -- | 1154 | Soumi Sengupta, Sanghamitra Bandyopadhyay. De Novo Design of Potential RecA Inhibitors Using MultiObjective Optimization |
| 1155 | -- | 1165 | Peng Chen 0001, Limsoon Wong, Jinyan Li. Detection of Outlier Residues for Improving Interface Prediction in Protein Heterocomplexes |
| 1166 | -- | 1179 | Georgina Mirceva, Ivana Cingovska, Zoran Dimov, Danco Davcev. Efficient Approaches for Retrieving Protein Tertiary Structures |
| 1180 | -- | 1189 | Nicoletta De Francesco, Giuseppe Lettieri, Luca Martini. Efficient Genotype Elimination via Adaptive Allele Consolidation |
| 1190 | -- | 1202 | Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Yanpeng Li. Hash Subgraph Pairwise Kernel for Protein-Protein Interaction Extraction |
| 1203 | -- | 1211 | Amina Noor, Erchin Serpedin, Mohamed N. Nounou, Hazem N. Nounou. Inferring Gene Regulatory Networks via Nonlinear State-Space Models and Exploiting Sparsity |
| 1212 | -- | 1219 | Chao Yang, Zengyou He, Can Yang, Weichuan Yu. Peptide Reranking with Protein-Peptide Correspondence and Precursor Peak Intensity Information |
| 1220 | -- | 1229 | Haitao Jiang, Chunfang Zheng, David Sankoff, Binhai Zhu. Scaffold Filling under the Breakpoint and Related Distances |
| 1230 | -- | 1244 | Ranadip Pal, Sonal Bhattacharya. Transient Dynamics of Reduced-Order Models of Genetic Regulatory Networks |
| 1245 | -- | 1256 | Jose Salavert Torres, Ignacio Blanquer Espert, Andres Tomas Dominguez, Vicente Hernández, Ignacio Medina, Joaquín Tárraga, Joaquín Dopazo. Using GPUs for the Exact Alignment of Short-Read Genetic Sequences by Means of the Burrows-Wheeler Transform |
| 1257 | -- | 1263 | Shaohong Zhang, Hau-San Wong, Ying Shen, Dongqing Xie. A New Unsupervised Feature Ranking Method for Gene Expression Data Based on Consensus Affinity |