Journal: IEEE/ACM Trans. Comput. Biology Bioinform.

Volume 9, Issue 6

1553 -- 1557Marie-France Sagot. EIC Editorial
1558 -- 1568James H. Degnan, Noah A. Rosenberg, Tanja Stadler. A Characterization of the Set of Species Trees that Produce Anomalous Ranked Gene Trees
1569 -- 1581Yang Tang, Zidong Wang, Huijun Gao, Stephen Swift, Jürgen Kurths. A Constrained Evolutionary Computation Method for Detecting Controlling Regions of Cortical Networks
1582 -- 1594Yuri Pirola, Gianluca Della Vedova, Stefano Biffani, Alessandra Stella, Paola Bonizzoni. A Fast and Practical Approach to Genotype Phasing and Imputation on a Pedigree with Erroneous and Incomplete Information
1595 -- 1606Nabila Kazmi, M. Alamgir Hossain, Roger M. Phillips. A Hybrid Cellular Automaton Model of Solid Tumor Growth and Bioreductive Drug Transport
1607 -- 1620Alessandro Abate, Stéphane Vincent, Roel Dobbe, Alberto Silletti, Neal Master, Jeffrey D. Axelrod, Claire J. Tomlin. A Mathematical Model to Study the Dynamics of Epithelial Cellular Networks
1621 -- 1628Gizem Çavuslar, Bülent Çatay, Mehmet Serkan Apaydin. A Tabu Search Approach for the NMR Protein Structure-Based Assignment Problem
1629 -- 1638Christopher Ma, Thomas K. F. Wong, Tak Wah Lam, Wing-Kai Hon, Kunihiko Sadakane, Siu-Ming Yiu. An Efficient Alignment Algorithm for Searching Simple Pseudoknots over Long Genomic Sequence
1639 -- 1648Ibrahim Burak Özyurt. Automatic Identification and Classification of Noun Argument Structures in Biomedical Literature
1649 -- 1662Meng-Yun Wu, Dao-Qing Dai, Yu Shi, Hong Yan, Xiao-fei Zhang. Biomarker Identification and Cancer Classification Based on Microarray Data Using Laplace Naive Bayes Model with Mean Shrinkage
1663 -- 1675Ozan Irsoy, Olcay Taner Yildiz, Ethem Alpaydin. Design and Analysis of Classifier Learning Experiments in Bioinformatics: Survey and Case Studies
1676 -- 1689Wendy Ashlock, Suprakash Datta. Distinguishing Endogenous Retroviral LTRs from SINE Elements Using Features Extracted from Evolved Side Effect Machines
1690 -- 1695Richard Tzong-Han Tsai. Improving Protein-Protein Interaction Pair Ranking with an Integrated Global Association Score
1696 -- 1708Seyedsasan Hashemikhabir, Eyüp Serdar Ayaz, Yusuf Kavurucu, Tolga Can, Tamer Kahveci. Large-Scale Signaling Network Reconstruction
1709 -- 1723Khachik Sargsyan, Cosmin Safta, Bert J. Debusschere, Habib N. Najm. Multiparameter Spectral Representation of Noise-Induced Competence in Bacillus Subtilis
1724 -- 1736Michael Margaliot, Tamir Tuller. On the Steady-State Distribution in the Homogeneous Ribosome Flow Model
1737 -- 1750Tobias Marschall, Inke Herms, Hans-Michael Kaltenbach, Sven Rahmann. Probabilistic Arithmetic Automata and Their Applications
1751 -- 1765Zhiwen Yu, Le Li, Jane You, Hau-San Wong, Guoqiang Han. SC³: Triple Spectral Clustering-Based Consensus Clustering Framework for Class Discovery from Cancer Gene Expression Profiles
1766 -- 1775Xin Ma, Jing Guo, Hongde Liu, Jianming Xie, Xiao Sun. Sequence-Based Prediction of DNA-Binding Residues in Proteins with Conservation and Correlation Information
1776 -- 1789Jianxin Wang, Yuannan Huang, Fang-Xiang Wu, Yi Pan. Symmetry Compression Method for Discovering Network Motifs
1790 -- 1804Mohammad Shafkat Amin, Russell L. Finley Jr., Hasan M. Jamil. Top-k Similar Graph Matching Using TraM in Biological Networks
1805 -- 1811Zachary Dwight, Robert Palais, Carl T. Wittwer. uAnalyze: Web-Based High-Resolution DNA Melting Analysis with Comparison to Thermodynamic Predictions
1812 -- 1818Matteo Re, Marco Mesiti, Giorgio Valentini. A Fast Ranking Algorithm for Predicting Gene Functions in Biomolecular Networks
1819 -- 1825Hazem N. Nounou, Mohamed N. Nounou, Nader Meskin, Aniruddha Datta, Edward R. Dougherty. Fuzzy Intervention in Biological Phenomena
1826 -- 1830George Papadakis, Electra Gizeli. In Silico Search of DNA Drugs Targeting Oncogenes
1831 -- 1836Manuele Bicego, Pietro Lovato, Alessandro Perina, Marianna Fasoli, Massimo Delledonne, Mario Pezzotti, Annalisa Polverari, Vittorio Murino. Investigating Topic Models' Capabilities in Expression Microarray Data Classification
1837 -- 1842Elena Grassi, Federico Di Gregorio, Ivan Molineris. KungFQ: A Simple and Powerful Approach to Compress fastq Files
1843 -- 1846Christina Boucher, Mohamed Omar. On the Hardness of Counting and Sampling Center Strings
1847 -- 1849Dániel Györffy, Péter Závodszky, András Szilágyi. "Pull Moves" for Rectangular Lattice Polymer Models Are Not Fully Reversible
1850 -- 1852Ricardo J. G. B. Campello, Davoud Moulavi, Jörg Sander. A Simpler and More Accurate AUTO-HDS Framework for Clustering and Visualization of Biological Data
1853 -- 0Stephanus Daniel Handoko, Xuchang Ouyang, Chinh Tran To Su, Chee Keong Kwoh, Yew-Soon Ong. Erratum to "QuickVina: Accelerating AutoDock Vina Using Gradient-Based Heuristics for Global Optimization"