Abstract is missing.
- An Introduction to Proteome BioinformaticsAndrew R. Jones, Simon J. Hubbard. 1-5 [doi]
- Bioinformatics Methods for Protein Identification Using Peptide Mass FingerprintingZhao Song, Luonan Chen, Dong Xu. 7-22 [doi]
- Computational Approaches to Peptide Identification via Tandem MSSimon J. Hubbard. 23-42 [doi]
- Scoring and Validation of Tandem MS Peptide Identification MethodsMarkus Brosch, Jyoti Choudhary. 43-53 [doi]
- Target-Decoy Search Strategy for Mass Spectrometry-Based ProteomicsJoshua E. Elias, Steven P. Gygi. 55-71 [doi]
- Understanding and Exploiting Peptide Fragment Ion Intensities Using Experimental and Informatic ApproachesAshley C. Gucinski, Eric D. Dodds, Wenzhou Li, Vicki H. Wysocki. 73-94 [doi]
- Spectral Library Searching for Peptide Identification via Tandem MSHenry Lam, Ruedi Aebersold. 95-103 [doi]
- De Novo Sequencing Methods in ProteomicsChristopher Hughes, Bin Ma, Gilles A. Lajoie. 105-121 [doi]
- Cross Species ProteomicsJ. C. Wright, R. J. Beynon, Simon J. Hubbard. 123-135 [doi]
- Gene Model Detection Using Mass SpectrometryBindu Nanduri, Nan Wang, Mark L. Lawrence, Susan M. Bridges, Shane C. Burgess. 137-144 [doi]
- Signal Processing in ProteomicsRene Hussong, Andreas Hildebrandt. 145-161 [doi]
- A High-Performance Reconfigurable Computing Solution for Peptide Mass FingerprintingDaniel Coca, István A. Bogdán, Robert J. Beynon. 163-185 [doi]
- Mining Proteomic MS/MS Data for MRM TransitionsJennifer A. Chem, Luca Bianco, Conrad Bessant. 187-199 [doi]
- OpenMS and TOPP: Open Source Software for LC-MS Data AnalysisKnut Reinert, Oliver Kohlbacher. 201-211 [doi]
- Trans-Proteomic Pipeline: A Pipeline for Proteomic AnalysisPatrick G. A. Pedrioli. 213-238 [doi]
- Informatics and Statistics for Analyzing 2-D Gel Electrophoresis ImagesAndrew W. Dowsey, Jeffrey S. Morris, Howard B. Gutstein, Guang-Zhong Yang. 239-255 [doi]
- Automated Generic Analysis Tools for Protein Quantitation Using Stable Isotope LabelingWen-Lian Hsu, Ting-Yi Sung. 257-272 [doi]
- An Overview of Label-Free Quantitation Methods in Proteomics by Mass SpectrometryJason W. H. Wong, Gerard Cagney. 273-283 [doi]
- The PeptideAtlas ProjectEric W. Deutsch. 285-296 [doi]
- Using the PRIDE Proteomics Identifications Database for Knowledge Discovery and Data AnalysisPhilip Jones, Lennart Martens. 297-307 [doi]
- Molecular Interactions and Data StandardisationSandra E. Orchard, Samuel Kerrien. 309-318 [doi]
- Mass Spectrometer Output File Format mzMLEric W. Deutsch. 319-331 [doi]
- Managing Experimental Data Using FuGEAndrew R. Jones, Allyson L. Lister. 333-343 [doi]
- Proteomics Data Collection (ProDaC): Publishing and Collecting Proteomics Data Sets in Public Repositories Using Standard FormatsChristian Stephan, Martin Eisenacher, Michael Kohl, Helmut E. Meyer. 345-368 [doi]
- Computational Resources for the Prediction and Analysis of Native Disorder in ProteinsMelissa M. Pentony, Jonathan J. Ward, David T. Jones. 369-393 [doi]