Abstract is missing.
- Chapter 1. Introduction to Proteome InformaticsConrad Bessant. 1-14 [doi]
- Chapter 2. De novo Peptide SequencingBin Ma. 15-38 [doi]
- Chapter 3. Peptide Spectrum Matching via Database Search and Spectral Library SearchBrian Netzel, Surendra Dasari. 39-68 [doi]
- Chapter 4. PSM Scoring and ValidationJames C. Wright, Jyoti Choudhary. 69-92 [doi]
- Chapter 5. Protein Inference and GroupingAndrew R. Jones. 93-115 [doi]
- CHAPTER 6. Identification and Localization of Post-Translational Modifications by High-Resolution Mass SpectrometryRune Matthiesen, Ana Sofia Carvalho. 116-132 [doi]
- Chapter 7. Algorithms for MS1-Based QuantitationHanqing Liao, Alexander Phillips, Andris Jankevics, Andrew W. Dowsey. 133-154 [doi]
- Chapter 8. MS2-Based QuantitationMarc Vaudel. 155-177 [doi]
- Chapter 9. Informatics Solutions for Selected Reaction MonitoringBirgit Schilling, Brendan MacLean, Jason M. Held, Bradford W. Gibson. 178-199 [doi]
- Chapter 10. Data Analysis for Data Independent AcquisitionPedro Navarro, Marco Trevisan-Herraz, Hannes L. Röst. 200-228 [doi]
- Chapter 11. Data Formats of the Proteomics Standards InitiativeJuan Antonio Vizcaíno, Simon Perkins, Andrew R. Jones, Eric W. Deutsch. 229-258 [doi]
- Chapter 12. OpenMS: A Modular, Open-Source Workflow System for the Analysis of Quantitative Proteomics DataLars Nilse. 259-288 [doi]
- Chapter 13. Using Galaxy for ProteomicsCandace R. Guerrero, Pratik D. Jagtap, James E. Johnson, Timothy J. Griffin. 289-320 [doi]
- Chapter 14. R for ProteomicsLisa M. Breckels, Sebastian Gibb, Vladislav A. Petyuk, Laurent Gatto. 321-364 [doi]
- Chapter 15. Proteogenomics: Proteomics for Genome AnnotationFawaz Ghali, Andrew R. Jones. 365-384 [doi]
- Chapter 16. Proteomics Informed by TranscriptomicsShyamasree Saha, David A. Matthews, Conrad Bessant. 385-405 [doi]