Learning the native-like codons with a 5'UTR and RNA secondary structure aided species-informed transformer model

Qiuyue Hu, Rui Zhou, ZhiHao Wang, Liangzhen Zheng, Yanjie Wei. Learning the native-like codons with a 5'UTR and RNA secondary structure aided species-informed transformer model. In Xinghua Mindy Shi, Xiaoning Qian, Minghan Chen, Jacob M. Luber, Gail L. Rosen, Yunan Luo, editors, Proceedings of the 16th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, BCB 2025, Element Philadelphia Downtown, Philadelphia, PA, USA, October 12-15, 2025. ACM, 2025. [doi]

Abstract

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