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Yuan Li, Shaojie Zhang. Finding stable local optimal RNA secondary structures. Bioinformatics, 27(21):2994-3001, 2011. [doi]

The following publications are possibly variants of this publication:

Finding consensus stable local optimal structures for aligned RNA sequencesYuan Li, Shaojie Zhang. iccabs 2012: 1-6 [doi]

Finding consensus stable local optimal structures for aligned RNA sequences and its application to discovering riboswitch elementsYuan Li, Cuncong Zhong, Shaojie Zhang. ijbra, 10(4/5):498-518, 2014. [doi]

Finding Common RNA Secondary Structures from RNA SequencesZhuozhi Wang, Kaizhong Zhang. cpm 1999: 258-269 [doi]

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