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An efficient implementation of Smith Waterman algorithm on GPU using CUDA, for massively parallel scanning of sequence databases

Lukasz Ligowski, Witold Rudnicki. An efficient implementation of Smith Waterman algorithm on GPU using CUDA, for massively parallel scanning of sequence databases. In 23rd IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2009, Rome, Italy, May 23-29, 2009. pages 1-8, IEEE, 2009. [doi]

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