Reconstructing Qwen3 into Qwen3-Protein: A Versatile Biophysics-Grounded Protein Language Foundation Model for PTMs and Downstream Tasks

Yiyu Lin, Sen Yang 0017, Jiahui Wu, Huaiyang Sun, Hao Wu, Lun Zhu, Yan Wang. Reconstructing Qwen3 into Qwen3-Protein: A Versatile Biophysics-Grounded Protein Language Foundation Model for PTMs and Downstream Tasks. In Xuefeng Cui, Xiujuan Lei, Yuri Porozov, editors, Bioinformatics Research and Applications - 22nd International Symposium, ISBRA 2026, Macao, China, July 22-24, 2026, Proceedings, Part I. Volume 16690 of Lecture Notes in Computer Science, pages 247-260, Springer, 2026. [doi]

@inproceedings{LinYWSWZW26,
  title = {Reconstructing Qwen3 into Qwen3-Protein: A Versatile Biophysics-Grounded Protein Language Foundation Model for PTMs and Downstream Tasks},
  author = {Yiyu Lin and Sen Yang 0017 and Jiahui Wu and Huaiyang Sun and Hao Wu and Lun Zhu and Yan Wang},
  year = {2026},
  doi = {10.1007/978-981-92-3716-6_20},
  url = {https://doi.org/10.1007/978-981-92-3716-6_20},
  researchr = {https://researchr.org/publication/LinYWSWZW26},
  cites = {0},
  citedby = {0},
  pages = {247-260},
  booktitle = {Bioinformatics Research and Applications - 22nd International Symposium, ISBRA 2026, Macao, China, July 22-24, 2026, Proceedings, Part I},
  editor = {Xuefeng Cui and Xiujuan Lei and Yuri Porozov},
  volume = {16690},
  series = {Lecture Notes in Computer Science},
  publisher = {Springer},
  isbn = {978-981-92-3716-6},
}