GenPIP: In-Memory Acceleration of Genome Analysis via Tight Integration of Basecalling and Read Mapping

Haiyu Mao, Mohammed Alser, Mohammad Sadrosadati, Can Firtina, Akanksha Baranwal, Damla Senol Cali, Aditya Manglik, Nour Almadhoun Alserr, Onur Mutlu. GenPIP: In-Memory Acceleration of Genome Analysis via Tight Integration of Basecalling and Read Mapping. In 55th IEEE/ACM International Symposium on Microarchitecture, MICRO 2022, Chicago, IL, USA, October 1-5, 2022. pages 710-726, IEEE, 2022. [doi]

Abstract

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