CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences

Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo. CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences. In R. Govindarajan, David A. Padua, Mary W. Hall, editors, Proceedings of the 15th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, PPOPP 2010, Bangalore, India, January 9-14, 2010. pages 137-146, ACM, 2010. [doi]

Abstract

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