TransCaller: An End-to-end Accelerated Transformer-based Nanopore Basecaller on GPUs

Di Xu, Peiheng Zhang, Yang Zhang, Shunchen Shi, Xueqi Li 0001. TransCaller: An End-to-end Accelerated Transformer-based Nanopore Basecaller on GPUs. In Xingpeng Jiang, Haiying Wang, Reda Alhajj, Xiaohua Hu, Felix Engel 0003, Mufti Mahmud, Nadia Pisanti, Xuefeng Cui, Hong Song, editors, IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023, Istanbul, Turkiye, December 5-8, 2023. pages 704-711, IEEE, 2023. [doi]

Abstract

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