GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics

Maxim Zvyagin, Alexander Brace, Kyle Hippe, Yuntian Deng, Bin Zhang, Cindy Orozco Bohorquez, Austin Clyde, Bharat Kale, Danilo Perez-Rivera, Heng Ma, Carla M. Mann, Michael W. Irvin, Defne G. Ozgulbas, Natalia Vassilieva, J. Gregory Pauloski, Logan T. Ward, Valérie Hayot-Sasson, Murali Emani, Sam Foreman, Zhen Xie, Diangen Lin, Maulik Shukla, Weili Nie, Josh Romero, Christian Dallago, Arash Vahdat, Chaowei Xiao, Thomas Gibbs, Ian T. Foster, James J. Davis 0002, Michael E. Papka, Thomas S. Brettin, Rick Stevens, Anima Anandkumar, Venkatram Vishwanath, Arvind Ramanathan. GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics. IJHPCA, 37(6):683-705, November 2023. [doi]

Authors

Maxim Zvyagin

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Alexander Brace

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Kyle Hippe

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Yuntian Deng

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Bin Zhang

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Cindy Orozco Bohorquez

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Austin Clyde

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Bharat Kale

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Danilo Perez-Rivera

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Heng Ma

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Carla M. Mann

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Michael W. Irvin

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Defne G. Ozgulbas

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Natalia Vassilieva

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J. Gregory Pauloski

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Logan T. Ward

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Valérie Hayot-Sasson

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Murali Emani

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Sam Foreman

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Zhen Xie

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Diangen Lin

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Maulik Shukla

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Weili Nie

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Josh Romero

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Christian Dallago

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Arash Vahdat

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Chaowei Xiao

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Thomas Gibbs

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Ian T. Foster

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James J. Davis 0002

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Michael E. Papka

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Thomas S. Brettin

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Rick Stevens

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Anima Anandkumar

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Venkatram Vishwanath

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Arvind Ramanathan

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