GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics

Maxim Zvyagin, Alexander Brace, Kyle Hippe, Yuntian Deng, Bin Zhang, Cindy Orozco Bohorquez, Austin Clyde, Bharat Kale, Danilo Perez-Rivera, Heng Ma, Carla M. Mann, Michael W. Irvin, Defne G. Ozgulbas, Natalia Vassilieva, J. Gregory Pauloski, Logan T. Ward, Valérie Hayot-Sasson, Murali Emani, Sam Foreman, Zhen Xie, Diangen Lin, Maulik Shukla, Weili Nie, Josh Romero, Christian Dallago, Arash Vahdat, Chaowei Xiao, Thomas Gibbs, Ian T. Foster, James J. Davis 0002, Michael E. Papka, Thomas S. Brettin, Rick Stevens, Anima Anandkumar, Venkatram Vishwanath, Arvind Ramanathan. GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics. IJHPCA, 37(6):683-705, November 2023. [doi]

@article{ZvyaginBHDZBCKPMMIOVPWHEFXLSNRDV23,
  title = {GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics},
  author = {Maxim Zvyagin and Alexander Brace and Kyle Hippe and Yuntian Deng and Bin Zhang and Cindy Orozco Bohorquez and Austin Clyde and Bharat Kale and Danilo Perez-Rivera and Heng Ma and Carla M. Mann and Michael W. Irvin and Defne G. Ozgulbas and Natalia Vassilieva and J. Gregory Pauloski and Logan T. Ward and Valérie Hayot-Sasson and Murali Emani and Sam Foreman and Zhen Xie and Diangen Lin and Maulik Shukla and Weili Nie and Josh Romero and Christian Dallago and Arash Vahdat and Chaowei Xiao and Thomas Gibbs and Ian T. Foster and James J. Davis 0002 and Michael E. Papka and Thomas S. Brettin and Rick Stevens and Anima Anandkumar and Venkatram Vishwanath and Arvind Ramanathan},
  year = {2023},
  month = {November},
  doi = {10.1177/10943420231201154},
  url = {https://doi.org/10.1177/10943420231201154},
  researchr = {https://researchr.org/publication/ZvyaginBHDZBCKPMMIOVPWHEFXLSNRDV23},
  cites = {0},
  citedby = {0},
  journal = {IJHPCA},
  volume = {37},
  number = {6},
  pages = {683-705},
}