Abstract is missing.
- Association Analysis Techniques for Bioinformatics ProblemsGowtham Atluri, Rohit Gupta, Gang Fang, Gaurav Pandey, Michael Steinbach, Vipin Kumar. 1-13 [doi]
- Analyzing and Interrogating Biological Networks (Abstract)Eric Banks, Elena Nabieva, Bernard Chazelle, Ryan Peterson, Mona Singh. 14-15 [doi]
- From Architecture to Function (and Back) in Bio-networksVladimir Filkov. 16-17 [doi]
- A New Machine Learning Approach for Protein Phosphorylation Site Prediction in PlantsJianjiong Gao, Ganesh Kumar Agrawal, Jay J. Thelen, Zoran Obradovic, A. Keith Dunker, Dong Xu. 18-29 [doi]
- Assembly of Large Genomes from Paired Short ReadsBenjamin G. Jackson, Patrick S. Schnable, Srinivas Aluru. 30-43 [doi]
- Amino Acid Classification and Hash Seeds for Homology SearchWeiming Li, Bin Ma, Kaizhong Zhang. 44-51 [doi]
- Genotype and Haplotype Reconstruction from Low-Coverage Short Sequencing ReadsIon I. Mandoiu. 52-53 [doi]
- Gene Networks Viewed through Two ModelsSatoru Miyano, Rui Yamaguchi, Yoshinori Tamada, Masao Nagasaki, Seiya Imoto. 54-66 [doi]
- Identifying Evolutionarily Conserved Protein Interaction Modules Using GraphHopperCorban G. Rivera, T. M. Murali. 67-78 [doi]
- The 2-Interval Pattern Matching Problems and Its Application to ncRNA ScanningThomas K. F. Wong, S. M. Yiu, T. W. Lam, Wing-Kin Sung. 79-89 [doi]
- RNA Pseudoknot Folding through Inference and Identification Using TAGRNASahar Al Seesi, Sanguthevar Rajasekaran, Reda A. Ammar. 90-101 [doi]
- Comparing Bacterial Genomes by Searching Their Common IntervalsSébastien Angibaud, Damien Eveillard, Guillaume Fertin, Irena Rusu. 102-113 [doi]
- Generalized Binary Tanglegrams: Algorithms and ApplicationsMukul S. Bansal, Wen-Chieh Chang, Oliver Eulenstein, David Fernández-Baca. 114-125 [doi]
- Three-Dimensional Multimodality Modelling by Integration of High-Resolution Interindividual Atlases and Functional MALDI-IMS DataFelix Bollenbeck, Stephanie Kaspar, Hans-Peter Mock, Diana Weier, Udo Seiffert. 126-138 [doi]
- Detecting Motifs in a Large Data Set: Applying Probabilistic Insights to Motif FindingChristina Boucher, Daniel G. Brown. 139-150 [doi]
- A Biclustering Method to Discover Co-regulated Genes Using Diverse Gene Expression DatasetsDoruk Bozdag, Jeffrey D. Parvin, Ümit V. Çatalyürek. 151-163 [doi]
- Computational Protocol for Screening GPI-anchored ProteinsWei Cao, Kazuya Sumikoshi, Tohru Terada, Shugo Nakamura, Katsuhiko Kitamoto, Kentaro Shimizu. 164-175 [doi]
- Towards Large-Scale Molecular Dynamics Simulations on Graphics ProcessorsJoseph E. Davis, Adnan Ozsoy, Sandeep Patel, Michela Taufer. 176-186 [doi]
- An Agent-Based Model of Solid Tumor ProgressionDidier Dréau, Dimitre Stanimirov, Ted Carmichael, Mirsad Hadzikadic. 187-198 [doi]
- Deciphering Drug Action and Escape Pathways: An Example on Nasopharyngeal CarcinomaDifeng Dong, Chun-Ying Cui, Benjamin Mow, Limsoon Wong. 199-210 [doi]
- Selection of Multiple SNPs in Case-Control Association Study Using a Discretized Network Flow ApproachShantanu Dutt, Yang Dai, Huan Ren, Joel Fontanarosa. 211-223 [doi]
- Biclustering Expression Data Based on Expanding Localized SubstructuresCesim Erten, Melih Sözdinler. 224-235 [doi]
- Constrained Fisher Scores Derived from Interaction Profile Hidden Markov Models Improve Protein to Protein Interaction PredictionAlvaro J. González, Li Liao. 236-247 [doi]
- Improving Protein Localization Prediction Using Amino Acid Group Based Physichemical EncodingJianjun Hu, Fan Zhang. 248-258 [doi]
- The Impact of Gene Selection on Imbalanced Microarray Expression DataAbu H. M. Kamal, Xingquan Zhu, Abhijit S. Pandya, Sam Hsu, Muhammad Shoaib. 259-269 [doi]
- Spatial Information and Boolean Genetic Regulatory NetworksMatthieu Manceny, Marc Aiguier, Pascale Le Gall, Joan Hérisson, Ivan Junier, François Képès. 270-281 [doi]
- Modeling of Genetic Regulatory Network in Stochastic pi-CalculusMylène Maurin, Morgan Magnin, Olivier H. Roux. 282-294 [doi]
- fMRI Activation Detection by MultiScale Hidden Markov ModelFangyuan Nan, Yaonan Wang, Xiaoping Ma. 295-306 [doi]
- cnF2freq: Efficient Determination of Genotype and Haplotype Probabilities in Outbred Populations Using Markov ModelsCarl Nettelblad, Sverker Holmgren, Lucy Crooks, Örjan Carlborg. 307-319 [doi]
- A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing ExperimentsHatice Gulcin Ozer, Doruk Bozdag, Terry Camerlengo, Jiejun Wu, Yi-Wen Huang, Timothy D. R. Hartley, Jeffrey D. Parvin, Tim Huang, Ümit V. Çatalyürek, Kun Huang. 320-330 [doi]
- A Fitness Distance Correlation Measure for Evolutionary TreesHyun Jung Park, Tiffani L. Williams. 331-342 [doi]
- Alignment and Analysis of Closely Related GenomesAllison Regier, Michael Olson, Scott J. Emrich. 343-352 [doi]
- Computational Prediction of Genes Translationally Regulated by Cytoplasmic Polyadenylation ElementsEric C. Rouchka, Xiangping Wang, James H. Graham, Nigel G. F. Cooper. 353-361 [doi]
- Multiple Sequence Alignment System for Pyrosequencing ReadsFahad Saeed, Ashfaq A. Khokhar, Osvaldo Zagordi, Niko Beerenwinkel. 362-375 [doi]
- A Bayesian Approach to High-Throughput Biological Model GenerationXinghua Shi, Rick L. Stevens. 376-387 [doi]
- Parallel Selection of Informative Genes for ClassificationMichael Slavik, Xingquan Zhu, Imad Mahgoub, Muhammad Shoaib. 388-399 [doi]
- Simulation Methods in Uncovering New Regulatory Mechanisms in Signaling PathwaysJaroslaw Smieja. 400-408 [doi]
- GridSPiM: A Framework for Simple Locality and Containment in the Stochastic pi-CalculusStephen Tyree, Rayus Kuplicki, Trevor Sarratt, Scott Fujan, John Hale. 409-423 [doi]
- Mutual Information Based Extrinsic Similarity for Microarray AnalysisDuygu Ucar, Fatih Altiparmak, Hakan Ferhatosmanoglu, Srinivasan Parthasarathy. 424-436 [doi]
- Graph Spectral Approach for Identifying Protein DomainsHari Krishna Yalamanchili, Nita Parekh. 437-448 [doi]