Abstract is missing.
- PharmaCoNER: Pharmacological Substances, Compounds and proteins Named Entity Recognition trackAitor Gonzalez-Agirre, Montserrat Marimon, Ander Intxaurrondo, Obdulia Rabal, Marta Villegas, Martin Krallinger. 1-10 [doi]
- When Specialization Helps: Using Pooled Contextualized Embeddings to Detect Chemical and Biomedical Entities in SpanishManuel Stoeckel, Wahed Hemati, Alexander Mehler. 11-15 [doi]
- VSP at PharmaCoNER 2019: Recognition of Pharmacological Substances, Compounds and Proteins with Recurrent Neural Networks in Spanish Clinical CasesVíctor Suárez-Paniagua. 16-20 [doi]
- IxaMed at PharmacoNER Challenge 2019Xabier Lahuerta, Iakes Goenaga, Koldo Gojenola, Aitziber Atutxa Salazar, Maite Oronoz. 21-25 [doi]
- NLNDE: Enhancing Neural Sequence Taggers with Attention and Noisy Channel for Robust Pharmacological Entity DetectionLukas Lange, Heike Adel, Jannik Strötgen. 26-32 [doi]
- A Deep Learning-Based System for PharmaCoNERYing Xiong, Yedan Shen, Yuanhang Huang, Shuai Chen, Buzhou Tang, Xiaolong Wang 0001, Qingcai Chen, Jun Yan, Yi Zhou. 33-37 [doi]
- Deep neural model with enhanced embeddings for pharmaceutical and chemical entities recognition in Spanish clinical textRenzo M. Rivera Zavala, Paloma Martínez. 38-46 [doi]
- A Neural Pipeline Approach for the PharmaCoNER Shared Task using Contextual Exhaustive ModelsMohammad Golam Sohrab, Pham Minh Thang, Makoto Miwa, Hiroya Takamura. 47-55 [doi]
- Biomedical Named Entity Recognition with Multilingual BERTKai Hakala, Sampo Pyysalo. 56-61 [doi]
- An Overview of the Active Gene Annotation Corpus and the BioNLP OST 2019 AGAC Track TasksYuxing Wang, Kaiyin Zhou, Mina Gachloo, Jingbo Xia. 62-71 [doi]
- Trigger Word Detection and Thematic Role Identification via BERT and Multitask LearningDongfang Li, Ying Xiong, Baotian Hu, Hanyang Du, Buzhou Tang, Qingcai Chen. 72-76 [doi]
- DeepGeneMD: A Joint Deep Learning Model for Extracting Gene Mutation-Disease Knowledge from PubMed LiteratureFeifan Liu, Xiaoyu Zheng, Bo Wang, Catarina I. Kiefe. 77-83 [doi]
- Biomedical relation extraction with pre-trained language representations and minimal task-specific architectureAshok Thillaisundaram, Theodosia Togia. 84-89 [doi]
- RACAI's System at PharmaCoNER 2019Radu Ion, Vasile Florian Pais, Maria Mitrofan. 90-99 [doi]
- Transfer Learning in Biomedical Named Entity Recognition: An Evaluation of BERT in the PharmaCoNER taskCong Sun, Zhihao Yang. 100-104 [doi]
- A Multi-Task Learning Framework for Extracting Bacteria Biotope InformationQi Zhang, Chao Liu, Ying Chi, Xuansong Xie, Xian-Sheng Hua 0001. 105-109 [doi]
- YNU-junyi in BioNLP-OST 2019: Using CNN-LSTM Model with Embeddings for SeeDev Binary Event ExtractionJunyi Li, Xiaobing Zhou, Yuhang Wu, Bin Wang. 110-114 [doi]
- Using Snomed to recognize and index chemical and drug mentionsPilar López-Úbeda, Manuel Carlos Díaz-Galiano, Luis Alfonso Ureña López, Maite Martín-Valdivia. 115-120 [doi]
- Bacteria Biotope at BioNLP Open Shared Tasks 2019Robert Bossy, Louise Deléger, Estelle Chaix, Mouhamadou Ba, Claire Nédellec. 121-131 [doi]
- Linguistically Informed Relation Extraction and Neural Architectures for Nested Named Entity Recognition in BioNLP-OST 2019Pankaj Gupta, Usama Yaseen, Hinrich Schütze. 132-142 [doi]
- An ensemble CNN method for biomedical entity normalizationPan Deng, Haipeng Chen, Mengyao Huang, Xiaowen Ruan, Liang Xu. 143-149 [doi]
- BOUN-ISIK Participation: An Unsupervised Approach for the Named Entity Normalization and Relation Extraction of Bacteria BiotopesIlknur Karadeniz, Ömer Faruk Tuna, Arzucan Özgür. 150-157 [doi]
- Bacteria Biotope Relation Extraction via Lexical Chains and Dependency GraphsWuti Xiong, Fei Li, Ming Cheng, Hong Yu, Donghong Ji. 158-167 [doi]
- Integration of Deep Learning and Traditional Machine Learning for Knowledge Extraction from Biomedical LiteratureJihang Mao, Wanli Liu. 168-173 [doi]
- CRAFT Shared Tasks 2019 Overview - Integrated Structure, Semantics, and CoreferenceWilliam A. Baumgartner Jr., Michael Bada, Sampo Pyysalo, Manuel R. Ciosici, Negacy D. Hailu, Harrison Pielke-Lombardo, Michael Regan, Lawrence Hunter. 174-184 [doi]
- UZH@CRAFT-ST: a Sequence-labeling Approach to Concept RecognitionLenz Furrer, Joseph Cornelius, Fabio Rinaldi 0001. 185-195 [doi]
- Coreference Resolution in Full Text Articles with BERT and Syntax-based Mention FilteringHai-Long Trieu, Anh-Khoa Duong Nguyen, Nhung Nguyen, Makoto Miwa, Hiroya Takamura, Sophia Ananiadou. 196-205 [doi]
- Neural Dependency Parsing of Biomedical Text: TurkuNLP entry in the CRAFT Structural Annotation TaskThang Minh Ngo, Jenna Kanerva, Filip Ginter, Sampo Pyysalo. 206-215 [doi]
- RDoC Task at BioNLP-OST 2019Mohammad Anani, Nazmul Kazi, Matthew Kuntz, Indika Kahanda. 216-226 [doi]
- BioNLP-OST 2019 RDoC Tasks: Multi-grain Neural Relevance Ranking Using Topics and Attention Based Query-Document-Sentence InteractionsPankaj Gupta, Yatin Chaudhary, Hinrich Schütze. 227-236 [doi]