Table of Contents

• Modelling the Effect of Genes on the Dynamics of Probabilistic Spiking Neural Networks for Computational Neurogenetic ModellingNikola K. Kasabov, Stefan Schliebs, Ammar Mohemmed. 1-9 [doi]
• Biostatistics Meets Bioinformatics in Integrating Information from Highdimensional Heterogeneous Genomic Data: Two Examples from Rare Genetic Diseases and Infectious DiseasesClelia Di Serio, Danilo Pellin, Alessandro Ambrosi, Ingrid K. Glad, Arnoldo Frigessi. 10-20 [doi]
• Bayesian Models for the Multi-sample Time-Course Microarray ExperimentsClaudia Angelini, Daniela De Canditiis, Marianna Pensky, Naomi Brownstein. 21-35 [doi]
• A Machine Learning Pipeline for Discriminant Pathways IdentificationAnnalisa Barla, Giuseppe Jurman, Roberto Visintainer, Margherita Squillario, Michele Filosi, Samantha Riccadonna, Cesare Furlanello. 36-48 [doi]
• Discovering Hidden Pathways in BioinformaticsPaulo J. G. Lisboa, Ian H. Jarman, Terence A. Etchells, Simon J. Chambers, Davide Bacciu, Joe Whittaker, Jonathan M. Garibaldi, Sandra Ortega-Martorell, Alfredo Vellido, Ian O. Ellis. 49-60 [doi]
• Reliability of miRNA Microarray Platforms: An Approach Based on Random Effects Linear ModelsNiccoló Bassani, Federico Ambrogi, Cristina Battaglia, Elia Biganzoli. 61-72 [doi]
• A Bioinformatics Procedure to Identify and Annotate Somatic Mutations in Whole-Exome Sequencing DataRoberta Spinelli, Rocco Piazza, Alessandra Pirola, Simona Valletta, Roberta Rostagno, Angela Mogavero, Manuela Marega, Hima Raman, Carlo Gambacorti-Passerini. 73-82 [doi]
• Feature Selection for the Prediction and Visualization of Brain Tumor Types Using Proton Magnetic Resonance Spectroscopy DataFélix Fernando González-Navarro, Lluís A. Belanche Muñoz. 83-97 [doi]
• On the Use of Graphical Models to Study ICU Outcome Prediction in Septic Patients Treated with StatinsVicent J. Ribas, Jesús Caballero Lopez, Anna Sáez de Tejada, Juan Carlos Ruiz-Rodríguez, Adolfo Ruiz-Sanmartin, Jordi Rello, Alfredo Vellido. 98-111 [doi]
• Integration of Biomolecular Interaction Data in a Genomic and Proteomic Data Warehouse to Support Biomedical Knowledge DiscoveryArif Canakoglu, Giorgio Ghisalberti, Marco Masseroli. 112-126 [doi]
• Machine-Learning Methods to Predict Protein Interaction Sites in Folded ProteinsCastrense Savojardo, Piero Fariselli, Damiano Piovesan, Pier Luigi Martelli, Rita Casadio. 127-135 [doi]
• Complementing Kernel-Based Visualization of Protein Sequences with Their Phylogenetic TreeMartha Ivón Cárdenas, Alfredo Vellido, Iván Olier, Xavier Rovira, Jesús Giraldo. 136-149 [doi]
• DEEN: A Simple and Fast Algorithm for Network Community DetectionPavol Jancura, Dimitrios Mavroeidis, Elena Marchiori. 150-163 [doi]
• Self-similarity in Physiological Time Series: New Perspectives from the Temporal Spectrum of Scale ExponentsPaolo Castiglioni. 164-175 [doi]
• Support Vector Machines for Survival RegressionAntonio Eleuteri, Azzam Fouad George Taktak. 176-189 [doi]
• Boosted C5 Trees i-Biomarkers Panel for Invasive Bladder Cancer Progression PredictionAlexandru George Floares, Irina Luludachi, Colin Dinney, Liana Adam. 190-200 [doi]
• A Faster Algorithm for Motif Finding in Sequences from ChIP-Seq DataFederico Zambelli, Giulio Pavesi. 201-212 [doi]
• β and Two-Color Channels in the Presence of Batch EffectsFabrice Colas, Jeanine J. Houwing-Duistermaat. 213-225 [doi]
• Supporting the Design, Communication and Management of Bioinformatic Protocols through the Leaf ToolFrancesco Napolitano, Roberto Tagliaferri. 226-237 [doi]
• Genomic Annotation Prediction Based on Integrated InformationDavide Chicco, Marco Tagliasacchi, Marco Masseroli. 238-252 [doi]
• Solving Biclustering with a GRASP-Like Metaheuristic: Two Case-Studies on Gene Expression AnalysisAngelo M. Facchiano, Paola Festa, Anna Marabotti, Luciano Milanesi, Francesco Musacchia. 253-267 [doi]