Table of Contents

• Modular clustering of protein-protein interaction networksNassim Sohaee, Christian V. Forst. 1-4 [doi]
• Expanded study of efn2 thermodynamic model performance on RnaPredict, an evolutionary algorithm for RNA foldingKay C. Wiese, Andrew Hendriks. 1-8 [doi]
• Modeling treatment and drug effects at the molecular level using hybrid system theoryXiangfang Li, Lijun Qian, Edward R. Dougherty. 1-7 [doi]
• Sequence transformation to a complex signature form for consistent phylogenetic tree using Extensible Markov ModelRao M. Kotamarti, Michael Hahsler, Douglas W. Raiford, Margaret H. Dunham. 1-8 [doi]
• Issues with the PipeAlign phylogenomics toolkit in identifying protein subfamiliesChristine Kehyayan, Gregory Butler. 1-6 [doi]
• Side effect machines for quaternary edit metric decodingJoseph A. Brown, Sheridan K. Houghten, Daniel A. Ashlock. 1-8 [doi]
• Mixing patterns in a global influenza a virus network using whole genome comparisonsAdrienne Breland, Mehmet Hadi Günes, Karen Schlauch, Frederick C. Harris Jr.. 1-8 [doi]
• DGA: Decomposition with genetic algorithm for multiple sequence alignmentFarhana Naznin, Ruhul A. Sarker, Daryl Essam. 1-8 [doi]
• Improved prediction of transcription binding sites from chromatin modification dataKengo Sato, Tom Whitington, Timothy L. Bailey, Paul Horton. 1-7 [doi]
• A Discrete Fourier Transform method for alignment of visual evoked potentialsIsmet Sahin, Nuri Yilmazer. 1-3 [doi]
• Support vectors based correlation coefficient for gene and sample selection in cancer classificationPiyushkumar A. Mundra, Jagath C. Rajapakse. 1-7 [doi]
• Detecting retroviruses using reading frame information and side effect machinesWendy Ashlock, Suprakash Datta. 1-8 [doi]
• Identification of a gene expression core signature for Duchenne muscular dystrophy (DMD) via integrative analysis reveals novel potential compounds for treatmentNoru Ichim-Moreno, Manuel Aranda, Christian R. Voolstra. 1-6 [doi]
• Searching for a single mathematical function to address the nonlinear retention time shifts problem in nanoLC-MS data: A fuzzy-evolutionary computational proteomics approachAlan J. Barton. 1-8 [doi]
• A comparative study of the time-series data for inference of gene regulatory networks using B-SplineHaixin Wang, James E. Glover, Lijun Qian. 1-5 [doi]
• Identifying essential features for the classification of real and pseudo microRNAs precursors using fuzzy decision treesNa'el Abu-halaweh, Robert W. Harrison. 1-7 [doi]
• Classifying Cytochrome c Oxidase subunit 1 by translation initiation mechanism using side effect machinesJustin Schonfeld, Dan Ashlock. 1-7 [doi]
• Exploring structural modeling of proteins for kernel-based enzyme discriminationMarco A. Alvarez, Changhui Yan. 1-5 [doi]
• Classification of HIV-1 protease crystal structures using Random Forest, linear discriminant analysis and logistic regressionGene M. Ko, A. Srinivas Reddy, Sunil Kumar, Srinivas A. Bailey, Rajni Garg. 1-8 [doi]
• Nearest neighbor training of side effect machines for sequence classificationDaniel A. Ashlock, Andrew McEachern. 1-8 [doi]
• Applying neural networks to classify influenza virus antigenic types and hostsPavan Kumar Attaluri, Zhengxin Chen, Guoqing Lu. 1-6 [doi]
• Additive noise analysis on microarray data via SVM classificationZejin Jason Ding, Yan-Qing Zhang. 1-7 [doi]
• Principal components analysis filters functionally significant peroxidase motionsMonique Laberge, Istvan Kovesi. 1-6 [doi]
• Paroxysmal Atrial Fibrillation diagnosis based on feature extraction and classificationBahareh Pourbabaee, Caro Lucas. 1-8 [doi]
• An exploration of individual RNA structural elements in RNA gene findingNicholas George Erho, Kay C. Wiese. 1-9 [doi]
• Functional data classification for temporal gene expression data with kernel-induced random forestsGuangzhe Fan, Jiguo Cao, Jiheng Wang. 1-5 [doi]
• A fitness-independent evolvability measure for evolutionary developmental systemsYaochu Jin, Jens Trommler. 1-8 [doi]
• Supervised learning of maternal cigarette-smoking signatures from placental gene expression data: A case studyChengpeng Bi, Carrie A. Vyhlidal, J. Steven Leeder. 1-6 [doi]
• New approaches to clustering microarray time-series data using multiple expression profile alignmentNumanul Subhani, Luis Rueda, Alioune Ngom, Conrad J. Burden. 1-7 [doi]
• Simulation of oscillatory dynamics of blood testosterone levels using the crossover methodAmit Sabnis, Robert W. Harrison. 1-6 [doi]
• Using decision trees to study the convergence of phylogenetic analysesGrant R. Brammer, Tiffani L. Williams. 1-8 [doi]
• Predicting chemical activities from structures by attributed molecular graph classificationQian Xu, Derek Hao Hu, Hong Xue, Qiang Yang. 1-8 [doi]
• Neural grammar networks for toxicologyChristopher J. F. Cameron, Eddie Y. T. Ma, Timothy C. Kremer. 1-8 [doi]
• A regression tree-based Gibbs sampler to learn the regulation programs in a transcription regulatory module networkJianlong Qi, Tom Michoel, Gregory Butler. 1-8 [doi]
• Super-resolution of mammogramsJun Zheng, Olac Fuentes, Ming-Ying Leung. 1-7 [doi]
• Towards a temporal modeling of the genetic network controlling Systemic Acquired Resistance in Arabidopsis thalianaAlain B. Tchagang, Heather Shearer, Sieu Phan, Hugo Bérubé, Fazel Famili, Pierre R. Fobert, Youlian Pan. 1-8 [doi]
• Improved PCR design for mouse DNA by training finite state machinesSalik R. Yadav, Steven M. Corns. 1-5 [doi]
• Missing value imputation methods for gene-sample-time microarray data analysisYifeng Li, Alioune Ngom, Luis Rueda. 1-7 [doi]
• Speeding up subcellular localization by extracting informative regions of protein sequences for profile alignmentWei Wang, Man-Wai Mak, Sun-Yuan Kung. 1-8 [doi]
• Machine learning approaches for customized docking scores: Modeling of inhibition of Mycobacterium tuberculosis enoyl acyl carrier protein reductaseGary B. Fogel, Jonathan Tran, Stephen Johnson, David Hecht. 1-6 [doi]
• Integrating multiple scoring functions to improve protein loop structure conformation space samplingYaohang Li, Ionel Rata, Eric Jakobsson. 1-8 [doi]
• Computation intelligence method to find generic non-coding RNA search modelsJennifer A. Smith. 1-5 [doi]