Table of Contents

• RFL-Score: Random Forest with Lasso Scoring Function for Protein-Ligand Molecular DockingOscar Emilio Arrúa Arce, Andrej Aderhold, Adriano Velasque Werhli, Karina dos Santos Machado. 1-8 [doi]
• ViPeC: Vision transformer-based approach for Peptide-protein interface ClassificationLucas Moraes dos Santos, Diego C. B. Mariano, Raquel Cardoso de Melo Minardi. 1-8 [doi]
• RNA Generative Modeling With Tree SearchStephen Obonyo, Nicolas Jouandeau, Dickson Owuor. 1-9 [doi]
• Clustering density based gene expression data in the mouse brainstem and comparison to actual neuroanatomyColin Buenvenida, Brandon Kong, Shane Jung, Kaiwen Kam, Jacob D. Furst, Thiruvarangan Ramaraj. 1-9 [doi]
• The Development of CanPrompt Strategy in Large Language Models for Cancer CareNoman Ahmad, Ehsan Mamatjan, Tursun Wali, Yasin Mamatjan. 1-6 [doi]
• SpatialVisVR: An Immersive, Multiplexed Medical Image Viewer with Contextual Similar-Patient SearchJai Prakash Veerla, Partha Sai Guttikonda, Amir Hajighasemi, Jillur Rahman Saurav, Aarti Darji, Cody T. Reynolds, Mohamed Mohamed 0014, Mohammad Sadegh Nasr 0001, Helen H. Shang, Jacob M. Luber. 1-8 [doi]
• Leveraging Large Language Models for Information Extraction: Identifying microRNA - Gene Interactions in Biomedical LiteratureSteve Stavropoulos, Elissavet Zacharopoulou, Spiros V. Georgakopoulos, Sotiris K. Tasoulis, Vassilis P. Plagianakos, Artemis G. Hatzigeorgiou. 1-7 [doi]
• Machine Learning Identifies Novel MicroRNA Biomarkers Predictive for Gastric CancerKedar Chintalapati. 1-5 [doi]
• Improving Machine Learning Based Sepsis Diagnosis Using Heart Rate VariabilitySai Balaji, Christopher Sun, Anaiy Somalwar. 1-8 [doi]
• Generating Models of Human Gait in Patients with Parkinson's Disease using Genetic ProgrammingTristan Navikevicius, Lígia Reis Nóbrega, Sheridan K. Houghten, Adriano de Oliveira Andrade, Adriano Alves Pereira. 1-9 [doi]
• Predicting Metabolic Reactions with a Molecular Transformer for Drug Design OptimizationSilvia Multari, Riza Özçelik, Angelica Mazzolari, Marco Salvatore Nobile, Francesca Grisoni. 1-8 [doi]
• Equivariant Graph Attention Networks with Structural Motifs for Predicting Cell Line-Specific Synergistic Drug CombinationsZachary Schwehr. 1-8 [doi]
• Machine Learning and Gut Microbiome for Breast Cancer ScreeningPriyamvada Daga, Mai Oudah. 1-7 [doi]
• SMOTE for gene regulatory network samplingGonzalo A. Ruz, Nitesh V. Chawla. 1-8 [doi]
• Artificial Neural Networks for the Rapid Prediction of Possible Ferroptosis Inducers Using the GPx4 EnzymeJesus Antonio Alvarado-Huayhuaz, Miquéias Amorim Santos Silva, Elvis Mauricio Jimenez Peña, Joel Claudio Rengifo Maraví, Angella M. Cordova-Muñoz, Karina dos Santos Machado. 1-6 [doi]
• Protein Structure Prediction Using Dynamic Speciation Evolutionary Algorithm with Aggregated Problem InformationRafael Stubs Parpinelli, Nicholas Wojeicchowski, Nilcimar Neitzel Will. 1-8 [doi]
• Driving Evolution Towards Discovery of Patterns in Sets of Weakly-Conserved DNA SequencesMichael Dubé, Sheridan K. Houghten, Steffen P. Graether. 1-9 [doi]
• Classification of LTR Retrotransposons via Interaction PredictionSilvana C. S. Cardoso, Douglas Silva Domingues, Alexandre Rossi Paschoal, Carlos N. Fischer, Ricardo Cerri. 1-8 [doi]
• Domain Generalization of Deep Learning Models Under Subgroup Shift in Breast Cancer PrognosisSören Richard Stahlschmidt, Benjamin Ulfenborg, Göran Falkman, Jane Synnergren. 1-8 [doi]
• Machine Learning-Enhanced Molecular Dynamics Analysis of Residue Variant Effects on Human ACE2 and Furin Protein Interactions with SARS-CoV-2 SpikeFelipe James de Almeida Vasquez, Arthur Scorsolini Fares, Silvana Giuliatti. 1-8 [doi]
• Immunity Vanishing Act: Epidemic Variant and Immunity Analysis via Evolutionary ComputationFarhana Yasmeen, Michael Dubé, Sheridan K. Houghten. 1-8 [doi]
• Forest-based Evolutionary Algorithm for Reconstructing Boolean Gene Regulatory NetworksNicolò Stranieri, Francesca M. Buffa, Andrea Tangherloni. 1-8 [doi]
• A Multiobjective Evolutionary Algorithm for Colon Cancer Biomarkers Identification on Gene Expression DataJorge Cubillos-Chaparro, Márcio Dorn, Manuel Villalobos-Cid, Mario Inostroza-Ponta. 1-8 [doi]
• Methods for Analyzing Swallowing Sound in Dysphagia Care: A Telemedicine ApproachIgnacio Sánchez-Gendriz, Ingridy M. P. Barbalho, Felipe Fernandes, Milena Magalhães Augusto, Maria de Jesus Gonçalves, Ivonaldo L. Barbosa Lima, Danilo Alves Pinto Nagem, Gleyson José Pinheiro Caldeira Silva, Ana Raquel Rodrigues Lindquist, Luca Freire Alves, Luiz Affonso Guedes, Ricardo Alexsandro de Medeiros Valentim. 1-8 [doi]
• AGED-ViT: A Novel Transformer-Based Framework for Diagnosis of Alzheimer's Disease by Leveraging Gene Expression DataAlbert Guo, Megan Fowler, Kay C. Wiese. 1-7 [doi]
• Evaluation of Transfer Learning Models on Traumatic Brain Injury Severity ClassificationNgoc Do, Daniel B. Hier, Tayo Obafemi-Ajayi. 1-8 [doi]
• A Fast Feature Selection for Interpretable Modeling Based on Fuzzy Inference SystemsAndrea Tangherloni, Paolo Cazzaniga, Nicolò Stranieri, Francesca M. Buffa, Marco S. Nobile. 1-8 [doi]
• Comprehensive Modeling and Question Answering of Cancer Clinical Practice Guidelines using LLMsBhumika Gupta, Pralaypati Ta, Keerthi Ram, Mohanasankar Sivaprakasam. 1-8 [doi]
• Towards Equitable Diagnosis: Bias Evaluation and Mitigation in Skin Cancer ClassificationEliana Raizman, Yiming Peng, Austin Deng. 1-9 [doi]
• A comprehensive study of databases to assess the reliability of metagenomic toolsInês Branco Martins, Jorge Miguel Silva, João Rafael Almeida. 1-6 [doi]
• Leveraging protein-protein interactions in phenotype prediction through graph neural networksRiccardo Smeriglio, Joana Rosell-Mirmi, Petia Radeva, Jordi Abante. 1-8 [doi]
• Towards Explainability of Dimension Reduction Plots of Unsupervised Learning Model OutcomesTony E. Astuhuaman Davila, Daniel B. Hier, Tayo Obafemi-Ajayi. 1-9 [doi]
• A Machine Learning algorithm for Predicting Translation Initiation Start PositionsStefanos Digenis, Dimitris Grigoriadis, Marios Miliotis, Artemis G. Hatzigeorgiou. 1-5 [doi]
• Evaluating the Segmentation Performance of Gross Volume Tumor in Cervical Cancer Using MRI ImagesNazar Zaki, Anusuya Krishnan, Rafat Damseh, Wenjian Qin, Ayham Zaitouny, Isaias Ghebrehiwet. 1-5 [doi]
• EURYALE: A versatile Nextflow pipeline for taxonomic classification and functional annotation of metagenomics dataJoão Vitor Ferreira Cavalcante, Iara Dantas de Souza, Diego A. A. Morais, Rodrigo J. S. Dalmolin. 1-7 [doi]
• A Closed-Loop Deep Brain Stimulation Biomedical Model of Parkinson's DiseaseTimothe Petitjean, Hugo Millet, Mariana F. P. Araújo, Renan Cipriano Moioli, Patrícia Amâncio Vargas, Caetano Mazzoni Ranieri. 1-8 [doi]
• Predicting Cancer Driver Genes: Leveraging Graph Convolutional Networks and Ensemble LearningRenan Soares de Andrades, Mariana Recamonde Mendoza. 1-8 [doi]
• An Approach for Modeling and Analysis of Insulin Biosynthesis using Petri NetsMaria Leandra Guateque, Antonio Basílio de Miranda, Marcos Catanho, Edward Hermann Haeusler, Sérgio Lifschitz. 1-8 [doi]