Abstract is missing.
- Computational detection of cis-regulatory modulesStein Aerts, Peter Van Loo, Gert Thijs, Yves Moreau, Bart De Moor. 5-14
- Metabolic economics and microbial proteome evolutionHiroshi Akashi. 15
- Searching for statistically significant regulatory modulesTimothy L. Bailey, William Stafford Noble. 16-25
- Ab initio reconstruction of metabolic pathwaysFrédéric Boyer, Alain Viari. 26-34
- How significant is 98.5 junk in mammalian genomes?Jürgen Brosius. 35
- HMM sampling and applications to gene finding and alternative splicingSimon Cawley, Lior Pachter. 36-41
- Predicting gene function in Saccharomyces cerevisiaeAmanda Clare, Ross D. King. 42-49
- Exploring potential target genes of signaling pathways by predicting conserved transcription factor binding sitesChristoph Dieterich, Ralf Herwig, Martin Vingron. 50-56
- Probabilistic models for identifying regulation networksNir Friedman. 57
- Inferring strengths of protein-protein interactions from experimental data using linear programmingMorihiro Hayashida, Nobuhisa Ueda, Tatsuya Akutsu. 58-65
- Upper bounds on maximum likelihood for phylogenetic treesMichael D. Hendy, Barbara R. Holland. 66-72
- A rapid method for detection of putative RNAi target genes in genomic dataYair Horesh, Amihood Amir, Shulamit Michaeli, Ron Unger. 73-80
- A novel approach to fold recognition using sequence-derived properties from sets of structurally similar local fragments of proteinsTorgeir R. Hvidsten, Andriy Kryshtafovych, Henryk Jan Komorowski, Krzysztof Fidelis. 81-91
- Analyzing resistance phenomena in HIV with bioinformatics methodsThomas Lengauer. 92
- Discovery of significant rules for classifying cancer diagnosis dataJinyan Li, Huiqing Liu, See-Kiong Ng, Limsoon Wong. 93-102
- Modeling sequencing errors by combining Hidden Markov modelsClaudio Lottaz, Christian Iseli, C. Victor Jongeneel, Philipp Bucher. 103-112
- A suffix tree approach to the interpretation of tandem mass spectra: applications to peptides of non-specific digestion and post-translational modificationsBingwen Lu, Ting Chen. 113-121
- Artificial gene networks for objective comparison of analysis algorithmsPedro Mendes, Wei Sha, Keying Ye. 122-129
- MCMC genome rearrangementIstván Miklós. 130-137
- Gene networks inference using dynamic Bayesian networksBruno-Edouard Perrin, Liva Ralaivola, Aurélien Mazurie, Samuele Bottani, Jacques Mallet, Florence d Alché-Buc. 138-148
- Finding subtle motifs by branching from sample stringsAlkes L. Price, Sriram Ramabhadran, Pavel A. Pevzner. 149-155
- The shortest common supersequence problem in a microarray production settingSven Rahmann. 156-161
- Reconstructing tumor genome architecturesBenjamin J. Raphael, Stanislav Volik, Colin Collins, Pavel A. Pevzner. 162-171
- A description of dynamical graphs associated to elementary regulatory circuitsElisabeth Remy, Brigitte Mossé, Claudine Chaouiya, Denis Thieffry. 172-178
- Fast feature selection using a simple estimation of distribution algorithm: a case study on splice site predictionYvan Saeys, Sven Degroeve, Dirk Aeyels, Yves Van de Peer, Pierre Rouzé. 179-188
- Divide-and-conquer multiple alignment with segment-based constraintsMichael Sammeth, Burkhard Morgenstern, Jens Stoye. 189-195
- Biclustering microarray data by Gibbs samplingQizheng Sheng, Yves Moreau, Bart De Moor. 196-205
- Finding optimal degenerate patterns in DNA sequencesDaisuke Shinozaki, Tatsuya Akutsu, Osamu Maruyama. 206-214
- Gene prediction with a hidden Markov model and a new intron submodelMario Stanke, Stephan Waack. 215-225
- Sources of genetic and phenotypic variabilityFrançois Taddei. 226
- Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detectionYoshinori Tamada, SunYong Kim, Hideo Bannai, Seiya Imoto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano. 227-236
- The proteome and the metabolomeJanet M. Thornton. 237
- Extracting active pathways from gene expression dataJean-Philippe Vert, Minoru Kanehisa. 238-244
- Comparative genomics of malaria parasites and its exploitation in a rodent malaria modelAndy Waters. 245
- Flexible structure alignment by chaining aligned fragment pairs allowing twistsYuzhen Ye, Adam Godzik. 246-255