Abstract is missing.
- Breast cancer subtype identification using machine learning techniquesForough Firoozbakht, Iman Rezaeian, Lisa Porter, Luis Rueda. 1-2 [doi]
- Poster: Context-sensitive use of bioinformatics tools with complementary functionalities for hypothesis generationVida Abedi, Mohammed Yeasin, Ramin Zand. 1-2 [doi]
- A systems biology analysis for the whole genome sequencing dataDeepali Jhamb, Meeta Pradhan, Akshay Desai, Mathew J. Palakal, Premkumar Duraiswamy. 1-6 [doi]
- EpiSpec: A formal specification language for parameterized agent-based models against epidemiological ground truthFaraz Hussain, Arvind Ramanathan, Laura L. Pullum, Sumit Kumar Jha. 1-6 [doi]
- A new multi-level thresholding algorithm for finding peaks in ChIP-Seq dataIman Rezaeian, Luis Rueda. 1-6 [doi]
- Efficient algorithms for error correction and compression of NGS dataSubrata Saha, Sanguthevar Rajasekaran. 1 [doi]
- "Imaging and image guidance in lung cancer therapeutics"Amit Sawant. 1 [doi]
- An integrated model of human Biomedical and Clinical Data structuresEgidijus Paliulis, Hesham H. Ali. 1-6 [doi]
- Reference-free inference of tumor phylogenies from single-cell sequencing dataAyshwarya Subramanian, Russell Schwartz. 1 [doi]
- Multi-scale modeling of microvascular reactivityJaimit Parikh, Adam Kapela, Daniel Rodriguez, Nikolaos Tsoukias. 1-2 [doi]
- "Informatics integrated into front end management of radiation oncology patients"David Schwartz. 1 [doi]
- A combinatorial algorithm to identify independent and recurrent copy number aberrations across cancer typesHsin-Ta Wu, Iman Hajirasouliha, Benjamin J. Raphael. 1 [doi]
- Constructing regulatory gene set networks to reveal novel insights into biological systemsChayaporn Suphavilai, Liugen Zhu, Jake Y. Chen. 1-2 [doi]
- Poster: Efficient record linkage techniquesAbdullah Al Mamun, Robert Aseltine, Sanguthevar Rajasekaran. 1 [doi]
- Identifying representative drug resistant mutants of HIV reverse transcriptaseXiaxia Yu, Robert W. Harrison, Irene T. Weber. 1 [doi]
- A computational method for drug repositioning using publicly available gene expression dataK. M. Shabana, K. A. Abdul Nazeer, Meeta Pradhan, Mathew J. Palakal. 1-2 [doi]
- How genome complexity can explain the hardness of aligning reads to genomesVinhthuy T. Phan, Shanshan Gao, Quang Tran, Nam S. Vo. 1-2 [doi]
- Comparison of data discretization methods for cross platform transfer of gene-expression based tumor subtyping classifierSegun Jung, Yingtao Bi, Ramana V. Davuluri. 1-2 [doi]
- "Use of computational biology in assessing treatment response and disease progression"John S. Yordy. 1 [doi]
- Modeling genetic heterogeneity in Hepatitis C Virus hyper-variable region 1 infers demographic characteristics of infected hostsJames Lara, Yury Kudhyakov. 1 [doi]
- Identification of protein interaction methods from biomedical literatureDeepali Jhamb, Anand Krishnan, Meelia Palakal, Yogesh Pandit, Mathew J. Palakal, Premkumar Duraiswamy. 1-6 [doi]
- A weighted classification model for peptide identificationXijun Liang, Zhonghang Xia, Xinnan Niu, Andrew J. Link. 1-2 [doi]
- Improving bisulfite short-read mapping efficiency with hairpin-bisulfite dataJacob Porter, Ming-an Sun, Hehuang Xie, Liqing Zhang. 1-2 [doi]
- "A global view of how technology is guiding radiation therapeutics for cancers"Puneeth Iyengar. 1 [doi]
- Parameter discovery for stochastic computational models in systems biology using Bayesian model checkingFaraz Hussain, Christopher James Langmead, Qi Mi, Joyeeta Dutta-Moscato, Yoram Vodovotz, Sumit Kumar Jha. 1-2 [doi]
- In search of perfect readsSoumitra Pal, Srinivas Aluruy. 1-2 [doi]
- Role of ADAR in determining the substitution pattern in sigma virus (Rhabdoviridae) in Drosophila melanogasterHelen Piontkivska, Sinu Paul, Brian Scharfenberg, Marta Wayne, Luis F. Matos, William G. Farmerie, Michael M. Miyamoto. 1 [doi]
- SAIS-OPT: On the characterization and optimization of the SA-IS algorithm for suffix array constructionNataliya Timoshevskaya, Wu-chun Feng. 1-6 [doi]
- Structural vs. functional mechanisms of duplicate gene loss following whole genome doublingDavid Sankoff, Baoyong Wang, Chunfang Zheng, Carlos Fernando Buen Abad Najar. 1-2 [doi]
- Putting humpty-dumpty together: Mining causal mechanistic biochemical models from big dataFaraz Hussain, Alvaro Velasquez, Emily Sassano, Sumit Kumar Jha. 1-6 [doi]
- Optimization of IMRT treatment plan with Kinetic Data StructuresDavid Allen, Ovidiu Daescu. 1-6 [doi]
- An SVM-based approach for discovering splicing junctions with RNA-SeqChong Chu, Yufeng Wu. 1 [doi]
- Viral quasispecies assembly from paired-end readsArmin Töpfer, Niko Beerenwinkel. 1 [doi]
- Oak Ridge Biosurveillance Toolkit: Scalable machine learning for public health surveillanceLaura L. Pullum, Arvind Ramanathan. 1 [doi]
- Reconstruction of influenza a virus variants from PacBio readsAlexander Artyomenko, Serghei Mangul, Nicholas C. Wu, Eleazar Eskin, Ren Sun, Alex Zelikovsky. 1 [doi]
- Characterization of probabilistic signaling networks through signal propagationHaitham Gabr, Tamer Kahveci. 1-2 [doi]
- Deterministic regression algorithm for transcriptome frequency estimationAdrian Caciula, Olga Glebova, Alexander Artyomenko, Serghei Mangul, James Lindsay, Ion I. Mandoiu, Alex Zelikovsky. 1 [doi]
- Detection of genetic relatedness between viral samples using EM-based clustering of next-generation sequencing dataPavel Skums, Alexander Artyomenko, Olga Glebova, Alex Zelikovsky, David S. Campo, Zoya Dimitrova, Yuri Khudyakov. 1 [doi]
- New computational methods for assessing the genetic relatedness of close viral variantsDavid S. Campo, Zoya Dimitrova, Guo-liang Xia, Pavel Skums, Lilia Ganova-Raeva, Yuri Khudyakov. 1 [doi]
- Heuristic pairwise alignment of de Bruijn graphs to facilitate simultaneous transcript discovery in related organisms from RNA-Seq dataShuhua Fu, Aaron M. Tarone, Sing-Hoi Sze. 1 [doi]
- SILP3: Maximum likelihood approach to scaffoldingIgor Mandric, James Lindsay, Ion I. Mandoiu, Alex Zelikovsky. 1 [doi]
- VGA: A method for viral quasispecies assembly from ultra-deep sequencing dataSerghei Mangul, Nicholas C. Wu, Nicholas Mancuso, Alex Zelikovsky, Ren Sun, Eleazar Eskin. 1 [doi]