Table of Contents

• A Bayesian Neural Net to Segment Images with Uncertainty Estimates and Good CalibrationRohit Jena, Suyash P. Awate. 3-15 [doi]
• Explicit Topological Priors for Deep-Learning Based Image Segmentation Using Persistent HomologyJames R. Clough, Ilkay Öksüz, Nicholas Byrne, Julia A. Schnabel, Andrew P. King. 16-28 [doi]
• Semi-supervised and Task-Driven Data AugmentationKrishna Chaitanya, Neerav Karani, Christian F. Baumgartner, Anton S. Becker, Olivio Donati, Ender Konukoglu. 29-41 [doi]
• Analyzing Brain Morphology on the Bag-of-Features ManifoldLaurent Chauvin, Kuldeep Kumar, Christian Desrosiers, Jacques A. de Guise, William M. Wells III, Matthew Toews. 45-56 [doi]
• Modeling and Inference of Spatio-Temporal Protein Dynamics Across Brain NetworksSara Garbarino, Marco Lorenzi. 57-69 [doi]
• InceptionGCN: Receptive Field Aware Graph Convolutional Network for Disease PredictionAnees Kazi, Shayan Shekarforoush, S. Arvind Krishna, Hendrik Burwinkel, Gerome Vivar, Karsten Kortüm, Seyed-Ahmad Ahmadi, Shadi Albarqouni, Nassir Navab. 73-85 [doi]
• Adaptive Graph Convolution Pooling for Brain Surface AnalysisKarthik Gopinath, Christian Desrosiers, Herve Lombaert. 86-98 [doi]
• On Training Deep 3D CNN Models with Dependent Samples in NeuroimagingYunyang Xiong, Hyunwoo J. Kim, Bhargav Tangirala, Ronak Mehta, Sterling C. Johnson, Vikas Singh. 99-111 [doi]
• A Deep Neural Network for Manifold-Valued Data with Applications to NeuroimagingRudrasis Chakraborty, Jose Bouza, Jonathan Manton, Baba C. Vemuri. 112-124 [doi]
• Improved Disease Classification in Chest X-Rays with Transferred Features from Report GenerationYuan Xue, Xiaolei Huang. 125-138 [doi]
• Limited Angle Tomography Reconstruction: Synthetic Reconstruction via Unsupervised Sinogram AdaptationBo Zhou, Xunyu Lin, Brendan L. Eck. 141-152 [doi]
• Improving Generalization of Deep Networks for Inverse Reconstruction of Image SequencesSandesh Ghimire, Prashnna Kumar Gyawali, Jwala Dhamala, John L. Sapp, Milan Horacek, Linwei Wang. 153-166 [doi]
• Minimizing Non-holonomicity: Finding Sheets in Fibrous StructuresBabak Samari, Tabish A. Syed, Kaleem Siddiqi. 183-194 [doi]
• Learning Low-Dimensional Representations of Shape Data Sets with Diffeomorphic AutoencodersAlexandre Bône, Maxime Louis, Olivier Colliot, Stanley Durrleman. 195-207 [doi]
• Diffeomorphic Medial ModelingPaul A. Yushkevich, Ahmed H. Aly, Jiancong Wang, Long Xie, Robert C. Gorman, Laurent Younes, Alison M. Pouch. 208-220 [doi]
• Controlling Meshes via Curvature: Spin Transformations for Pose-Invariant Shape ProcessingLoïc Le Folgoc, Daniel C. Castro, Jeremy Tan, Bishesh Khanal, Konstantinos Kamnitsas, Ian Walker, Amir Alansary, Ben Glocker. 221-234 [doi]
• Local Optimal Transport for Functional Brain Template EstimationThomas Bazeille, H. Richard, Hicham Janati, Bertrand Thirion. 237-248 [doi]
• Unsupervised Deformable Registration for Multi-modal Images via Disentangled RepresentationsChen Qin, Bibo Shi, Rui Liao, Tommaso Mansi, Daniel Rueckert, Ali Kamen. 249-261 [doi]
• Real-Time 2D-3D Deformable Registration with Deep Learning and Application to Lung Radiotherapy TargetingMarkus D. Foote, Blake E. Zimmerman, Amit Sawant, Sarang C. Joshi. 265-276 [doi]
• Deep Modeling of Growth Trajectories for Longitudinal Prediction of Missing Infant Cortical SurfacesPeirong Liu, Zhengwang Wu, Gang Li, Pew-Thian Yap, Dinggang Shen. 277-288 [doi]
• Integrating Convolutional Neural Networks and Probabilistic Graphical Modeling for Epileptic Seizure Detection in Multichannel EEGJeff Craley, Emily Johnson, Archana Venkataraman. 291-303 [doi]
• A Novel Sparse Overlapping Modularized Gaussian Graphical Model for Functional Connectivity EstimationZhiyuan Zhu, Zonglei Zhen, Xia Wu. 304-315 [doi]
• Asymmetry Spectrum Imaging for Baby Diffusion TractographyYe Wu, Weili Lin, Dinggang Shen, Pew-Thian Yap. 319-331 [doi]
• A Fast Fiber k-Nearest-Neighbor Algorithm with Application to Group-Wise White Matter Topography AnalysisJunyan Wang, Yonggang Shi. 332-344 [doi]
• 3D Organ Shape Reconstruction from Topogram ImagesElena Balashova, Jiangping Wang, Vivek Singh, Bogdan Georgescu, Brian Teixeira, Ankur Kapoor. 347-359 [doi]
• A Cross-Center Smoothness Prior for Variational Bayesian Brain Tissue SegmentationWouter M. Kouw, Silas N. Ørting, Jens Petersen, Kim Steenstrup Pedersen, Marleen de Bruijne. 360-371 [doi]
• A Graph Model of the Lungs with Morphology-Based Structure for Tuberculosis Type ClassificationYashin Dicente Cid, Oscar Alfonso Jiménez del Toro, Pierre-Alexandre Poletti, Henning Müller. 372-383 [doi]
• A Longitudinal Model for Tau Aggregation in Alzheimer's Disease Based on Structural ConnectivityFan Yang, Samadrita Roy Chowdhury, Heidi I. L. Jacobs, Keith A. Johnson, Joyita Dutta. 384-393 [doi]
• Accurate Nuclear Segmentation with Center Vector EncodingJiahui Li, Zhiqiang Hu, Shuang Yang. 394-404 [doi]
• Bayesian Longitudinal Modeling of Early Stage Parkinson's Disease Using DaTscan ImagesYuan Zhou, Hemant D. Tagare. 405-416 [doi]
• Brain Tumor Segmentation on MRI with Missing ModalitiesYan Shen, Mingchen Gao. 417-428 [doi]
• Contextual Fibre Growth to Generate Realistic Axonal Packing for Diffusion MRI SimulationRoss Callaghan, Daniel C. Alexander, Hui Zhang 0005, Marco Palombo. 429-440 [doi]
• DeepCenterline: A Multi-task Fully Convolutional Network for Centerline ExtractionZhihui Guo, Junjie Bai, Yi Lu, Xin Wang 0045, Kunlin Cao, Qi Song, Milan Sonka, Youbing Yin. 441-453 [doi]
• ECKO: Ensemble of Clustered Knockoffs for Robust Multivariate Inference on fMRI DataTuan-Binh Nguyen, Jérôme-Alexis Chevalier, Bertrand Thirion. 454-466 [doi]
• Graph Convolutional Nets for Tool Presence Detection in Surgical VideosSheng Wang, Zheng Xu 0005, Chaochao Yan, JunZhou Huang. 467-478 [doi]
• High-Order Oriented Cylindrical Flux for Curvilinear Structure Detection and Vessel SegmentationJierong Wang, Albert C. S. Chung. 479-491 [doi]
• Joint CS-MRI Reconstruction and Segmentation with a Unified Deep NetworkLiyan Sun, Zhiwen Fan, Xinghao Ding, Yue Huang 0001, John W. Paisley. 492-504 [doi]
• Learning a Conditional Generative Model for Anatomical Shape AnalysisBenjamín Gutiérrez-Becker, Christian Wachinger. 505-516 [doi]
• Manifold Exploring Data Augmentation with Geometric Transformations for Increased Performance and RobustnessMagdalini Paschali, Walter Simson, Abhijit Guha Roy, Rüdiger Göbl, Christian Wachinger, Nassir Navab. 517-529 [doi]
• Multifold Acceleration of Diffusion MRI via Deep Learning Reconstruction from Slice-Undersampled DataYoonmi Hong, Geng Chen, Pew-Thian Yap, Dinggang Shen. 530-541 [doi]
• Riemannian Geometry Learning for Disease Progression ModellingMaxime Louis, Raphaël Couronné, Igor Koval, Benjamin Charlier, Stanley Durrleman. 542-553 [doi]
• Semi-supervised Brain Lesion Segmentation with an Adapted Mean Teacher ModelWenhui Cui, Yanlin Liu, Yuxing Li, Menghao Guo, Yiming Li, Xiuli Li, Tianle Wang, Xiangzhu Zeng, Chuyang Ye. 554-565 [doi]
• Shrinkage Estimation on the Manifold of Symmetric Positive-Definite Matrices with Applications to NeuroimagingChun-Hao Yang, Baba C. Vemuri. 566-578 [doi]
• Simultaneous Spatial-Temporal Decomposition of Connectome-Scale Brain Networks by Deep Sparse Recurrent Auto-EncodersQing Li, Qinglin Dong, Fangfei Ge, Ning Qiang, Yu Zhao, Han Wang, Heng Huang, Xia Wu, Tianming Liu. 579-591 [doi]
• Ultrasound Image Representation Learning by Modeling Sonographer Visual AttentionRichard Droste, Yifan Cai, Harshita Sharma, Pierre Chatelain, Lior Drukker, Aris T. Papageorghiou, J. Alison Noble. 592-604 [doi]
• A Coupled Manifold Optimization Framework to Jointly Model the Functional Connectomics and Behavioral Data SpacesNiharika Shimona D'Souza, Mary Beth Nebel, Nicholas Wymbs, Stewart Mostofsky, Archana Venkataraman. 605-616 [doi]
• A Geometric Framework for Feature Mappings in Multimodal Fusion of Brain Image DataWen Zhang, Liang Mi, Paul M. Thompson, Yalin Wang 0001. 617-630 [doi]
• A Hierarchical Manifold Learning Framework for High-Dimensional Neuroimaging DataSiyuan Gao, Gal Mishne, Dustin Scheinost. 631-643 [doi]
• A Model for Elastic Evolution on Foliated ShapesDai-Ni Hsieh, Sylvain Arguillère, Nicolas Charon, Michael I. Miller, Laurent Younes. 644-655 [doi]
• Analyzing Mild Cognitive Impairment Progression via Multi-view Structural LearningLi Wang, Paul M. Thompson, Dajiang Zhu. 656-668 [doi]
• New Graph-Blind Convolutional Network for Brain Connectome Data AnalysisYanfu Zhang, Heng Huang. 669-681 [doi]
• CIA-Net: Robust Nuclei Instance Segmentation with Contour-Aware Information AggregationYanning Zhou, Omer Fahri Onder, Qi Dou, Efstratios Tsougenis, Hao Chen, Pheng-Ann Heng. 682-693 [doi]
• Data-Driven Model Order Reduction for Diffeomorphic Image RegistrationJian Wang, Wei Xing, Robert M. Kirby, Miaomiao Zhang. 694-705 [doi]
• DGR-Net: Deep Groupwise Registration of Multispectral ImagesTongtong Che, Yuanjie Zheng, Xiaodan Sui, Yanyun Jiang, Jinyu Cong, Wanzhen Jiao, Bojun Zhao. 706-717 [doi]
• Efficient Interpretation of Deep Learning Models Using Graph Structure and Cooperative Game Theory: Application to ASD Biomarker DiscoveryXiaoxiao Li, Nicha C. Dvornek, Yuan Zhou, Juntang Zhuang, Pamela Ventola, James S. Duncan. 718-730 [doi]
• Generalizations of Ripley's K-function with Application to Space CurvesJon Sporring, Rasmus Waagepetersen, Stefan Sommer. 731-742 [doi]
• Group Level MEG/EEG Source Imaging via Optimal Transport: Minimum Wasserstein EstimatesHicham Janati, Thomas Bazeille, Bertrand Thirion, Marco Cuturi, Alexandre Gramfort. 743-754 [doi]
• InSpect: INtegrated SPECTral Component Estimation and Mapping for Multi-contrast Microstructural MRIPaddy J. Slator, Jana Hutter, Razvan V. Marinescu, Marco Palombo, Alexandra L. Young, Laurence H. Jackson, Alison Ho, Lucy C. Chappell, Mary A. Rutherford, Joseph V. Hajnal, Daniel C. Alexander. 755-766 [doi]
• Joint Inference on Structural and Diffusion MRI for Sequence-Adaptive Bayesian Segmentation of Thalamic Nuclei with Probabilistic AtlasesJuan Eugenio Iglesias, Koen Van Leemput, Polina Golland, Anastasia Yendiki. 767-779 [doi]
• Learning-Based Optimization of the Under-Sampling Pattern in MRICagla Deniz Bahadir, Adrian V. Dalca, Mert R. Sabuncu. 780-792 [doi]
• Melanoma Recognition via Visual AttentionYiqi Yan, Jeremy Kawahara, Ghassan Hamarneh. 793-804 [doi]
• Nonlinear Markov Random Fields Learned via BackpropagationMikael Brudfors, Yaël Balbastre, John Ashburner. 805-817 [doi]
• Robust Biophysical Parameter Estimation with a Neural Network Enhanced Hamiltonian Markov Chain Monte Carlo SamplerThomas Yu, Marco Pizzolato, Gabriel Girard, Jonathan Rafael-Patino, Erick Jorge Canales-Rodríguez, Jean-Philippe Thiran. 818-829 [doi]
• SHAMANN: Shared Memory Augmented Neural NetworksCosmin I. Bercea, Olivier Pauly, Andreas K. Maier, Florin C. Ghesu. 830-841 [doi]
• Signet Ring Cell Detection with a Semi-supervised Learning FrameworkJiahui Li, Shuang Yang, Xiaodi Huang, Qian Da, Xiaoqun Yang, Zhiqiang Hu, Qi Duan, Chaofu Wang, Hongsheng Li. 842-854 [doi]
• Spherical U-Net on Cortical Surfaces: Methods and ApplicationsFenqiang Zhao, Shunren Xia, Zhengwang Wu, Dingna Duan, Li Wang, Weili Lin, John H. Gilmore, Dinggang Shen, Gang Li. 855-866 [doi]
• Variational Autoencoder with Truncated Mixture of Gaussians for Functional Connectivity AnalysisQingyu Zhao, Nicolas Honnorat, Ehsan Adeli, Adolf Pfefferbaum, Edith V. Sullivan, Kilian M. Pohl. 867-879 [doi]