Abstract is missing.
- Mitochondrial Haplogroup Assignment for High-Throughput Sequencing Data from Single Individual and Mixed DNA SamplesFahad Alqahtani, Ion I. Mandoiu. 1-12 [doi]
- Signet Ring Cell Detection with Classification Reinforcement Detection NetworkSai Wang, Caiyan Jia, Zhineng Chen, Xieping Gao. 13-25 [doi]
- SPOC: Identification of Drug Targets in Biological Networks via Set Preference Output ControlHao Gao, Min Li, Fang-Xiang Wu. 26-37 [doi]
- Identification of a Novel Compound Heterozygous Variant in NBAS Causing Bone Fragility by the Type of Osteogenesis ImperfectaD. A. Petukhova, E. E. Gurinova, A. L. Sukhomyasova, N. R. Maksimova. 38-43 [doi]
- Isoform-Disease Association Prediction by Data FusionQiuyue Huang, Jun Wang, Xiangliang Zhang 0001, Guoxian Yu. 44-55 [doi]
- EpIntMC: Detecting Epistatic Interactions Using Multiple ClusteringsHuiling Zhang, Guoxian Yu, Wei Ren, Maozu Guo, Jun Wang. 56-67 [doi]
- Improving Metagenomic Classification Using Discriminative k-mers from Sequencing DataDavide Storato, Matteo Comin. 68-81 [doi]
- Dilated-DenseNet for Macromolecule Classification in Cryo-electron TomographyShan Gao, Renmin Han, Xiangrui Zeng, Xuefeng Cui, Zhiyong Liu, Min Xu, Fa Zhang. 82-94 [doi]
- Ess-NEXG: Predict Essential Proteins by Constructing a Weighted Protein Interaction Network Based on Node Embedding and XGBoostNian Wang, Min Zeng, Jiashuai Zhang, Yiming Li, Min Li. 95-104 [doi]
- mapAlign: An Efficient Approach for Mapping and Aligning Long Reads to Reference GenomesWen Yang, Lusheng Wang 0001. 105-118 [doi]
- Functional Evolutionary Modeling Exposes Overlooked Protein-Coding Genes Involved in CancerNadav Brandes, Nathan Linial, Michal Linial. 119-126 [doi]
- Testing the Agreement of Trees with Internal LabelsDavid Fernández-Baca, Lei Liu. 127-139 [doi]
- SVLR: Genome Structure Variant Detection Using Long Read Sequencing DataWenyan Gu, Aizhong Zhou, Lusheng Wang, Shiwei Sun, Xuefeng Cui, Daming Zhu. 140-153 [doi]
- De novo Prediction of Drug-Target Interaction via Laplacian Regularized Schatten-p Norm MinimizationGaoyan Wu, Mengyun Yang, Yaohang Li, Jianxin Wang 0001. 154-165 [doi]
- Diagnosis of ASD from rs-fMRI Images Based on Brain Dynamic NetworksHongyu Guo, Wutao Yin, Sakib Mostafa, Fang-Xiang Wu. 166-177 [doi]
- MiRNA-Disease Associations Prediction Based on Negative Sample Selection and Multi-layer PerceptronNa Li, Guihua Duan, Cheng Yan, Fang-Xiang Wu, Jianxin Wang 0001. 178-188 [doi]
- Checking Phylogenetic Decisiveness in Theory and in PracticeGhazaleh Parvini, Katherine Braught, David Fernández-Baca. 189-202 [doi]
- TNet: Phylogeny-Based Inference of Disease Transmission Networks Using Within-Host Strain DiversitySaurav Dhar, Chengchen Zhang, Ion I. Mandoiu, Mukul S. Bansal. 203-216 [doi]
- Cancer Breakpoint Hotspots Versus Individual Breakpoints Prediction by Machine Learning ModelsKseniia Cheloshkina, Islam Bzhikhatlov, Maria Poptsova. 217-228 [doi]
- Integer Linear Programming Formulation for the Unified Duplication-Loss-Coalescence ModelJavad Ansarifar, Alexey Markin, Pawel Górecki 0001, Oliver Eulenstein. 229-242 [doi]
- In Silico-Guided Discovery of Potential HIV-1 Entry Inhibitors Mimicking bNAb N6: Virtual Screening, Docking, Molecular Dynamics, and Post-Molecular Modeling AnalysisAlexander M. Andrianov, Grigory I. Nikolaev, Yuri V. Kornoushenko, Anna D. Karpenko, Ivan P. Bosko, Alexander V. Tuzikov. 243-249 [doi]
- Learning Structural Genetic Information via Graph Neural EmbeddingYuan Xie, Yulong Pei, Yun Lu, Haixu Tang, Yuan Zhou. 250-261 [doi]
- The Cross-Interpretation of QSAR Toxicological ModelsOleg Tinkov, Pavel G. Polishchuk, Veniamin Grigorev, Yuri Porozov. 262-273 [doi]
- A New Network-Based Tool to Analyse Competing Endogenous RNAsSelcen Ari Yuka, Alper Yilmaz. 274-281 [doi]
- Deep Ensemble Models for 16S Ribosomal Gene ClassificationHeta P. Desai, Anuja P. Parameshwaran, Rajshekhar Sunderraman, Michael Weeks. 282-290 [doi]
- Search for Tandem Repeats in the First Chromosome from the Rice GenomeEugene V. Korotkov, Anastasya M. Kamionskaya, Maria A. Korotkova. 291-295 [doi]
- Deep Learning Approach with Rotate-Shift Invariant Input to Predict Protein Homodimer StructureAnna Hadarovich, Alexander Kalinouski, Alexander V. Tuzikov. 296-303 [doi]
- Development of a Neural Network-Based Approach for Prediction of Potential HIV-1 Entry Inhibitors Using Deep Learning and Molecular Modeling MethodsGrigory I. Nikolaev, Nikita A. Shuldov, Arseny I. Anischenko, Alexander V. Tuzikov, Alexander M. Andrianov. 304-311 [doi]
- In Silico Design and Evaluation of Novel Triazole-Based Compounds as Promising Drug Candidates Against Breast CancerAlexander M. Andrianov, Grigory I. Nikolaev, Yuri V. Kornoushenko, Sergei A. Usanov. 312-318 [doi]
- Identification of Essential Genes with NemoProfile and Various Machine Learning ModelsYangxiao Wang, WooYoung Kim. 319-326 [doi]
- NemoLib: Network Motif Libraries for Network Motif Detection and AnalysisWooYoung Kim, Zachary Arthur Brader. 327-334 [doi]
- Estimating Enzyme Participation in Metabolic Pathways for Microbial Communities from RNA-seq DataF. Rondel, R. Hosseini, B. Sahoo, Sergey Knyazev, Igor Mandric, Frank Stewart, Ion I. Mandoiu, Bogdan Pasaniuc, Alex Zelikovsky. 335-343 [doi]
- Identification of Virus-Receptor Interactions Based on Network Enhancement and SimilarityLingzhi Zhu, Cheng Yan, Guihua Duan. 344-351 [doi]
- Enhanced Functional Pathway Annotations for Differentially Expressed Gene ClustersChun-Cheng Liu, Tao-Chuan Shih, Tun-Wen Pai, Chin-Hwa Hu, Lee-Jyi Wang. 352-363 [doi]
- Automated Detection of Sleep Apnea from Abdominal Respiratory Signal Using Hilbert-Huang TransformXingfeng Lv, Jinbao Li, Qin Yan. 364-371 [doi]
- Na/K-ATPase Glutathionylation: in silico Modeling of Reaction MechanismsYaroslav V. Solovev, Daria S. Ostroverkhova, Gaik Tamazian, Anton V. Domnin, Anastasya A. Anashkina, Irina Yu. Petrushanko, Eugene O. Stepanov, Yuri B. Porozov. 372-380 [doi]
- HiChew: a Tool for TAD Clustering in EmbryogenesisNikolai S. Bykov, Olga M. Sigalova, Mikhail S. Gelfand, Aleksandra A. Galitsyna. 381-388 [doi]
- SC1: A Tool for Interactive Web-Based Single Cell RNA-Seq Data AnalysisMarmar Moussa, Ion I. Mandoiu. 389-397 [doi]
- Quantitative Analysis of the Dynamics of Maternal Gradients in the Early Drosophila EmbryoEkaterina M. Myasnikova, Victoria Yu. Samuta, Alexander V. Spirov. 398-405 [doi]
- Atom Tracking Using Cayley GraphsMarc Hellmuth, Daniel Merkle, Nikolai Nøjgaard. 406-415 [doi]