Abstract is missing.
- ISMB 2002Janice I. Glasgow, Burkhard Rost. 1-4
- Mining viral protease data to extract cleavage knowledgeAjit Narayanan, Xikun Wu, Zheng Rong Yang. 5-13
- The metric space of proteins-comparative study of clustering algorithmsOri Sasson, Nathan Linial, Michal Linial. 14-21
- DNA sequence and structure: direct and indirect recognition in protein-DNA bindingNicholas R. Steffen, S. D. Murphy, L. Tolleri, G. Wesley Hatfield, Richard H. Lathrop. 22-30
- Beyond tandem repeats: complex pattern structures and distant regions of similarityAmy M. Hauth, Deborah Joseph. 31-37
- The POPPs: clustering and searching using peptide probability profilesMichael J. Wise. 38-45
- A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteinsPier Luigi Martelli, Piero Fariselli, Anders Krogh, Rita Casadio. 46-53
- Fully automated ab initio protein structure prediction using I-STES, HMMSTR and ROSETTAChris Bystroff, Yu Shao. 54-61
- Prediction of contact maps by GIOHMMs and recurrent neural networks using lateral propagation from all four cardinal cornersGianluca Pollastri, Pierre Baldi. 62-70
- Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologuesTal Pupko, Rachel E. Bell, Itay Mayrose, Fabian Glaser, Nir Ben-Tal. 71-77
- Inferring sub-cellular localization through automated lexical analysisRajesh Nair, Burkhard Rost. 78-86
- Support vector regression applied to the determination of the developmental age of a Drosophila embryo from its segmentation gene expression patternsEkaterina Myasnikova, Anastassia Samsonova, Maria Samsonova, John Reinitz. 87-95
- Variance stabilization applied to microarray data calibration and to the quantification of differential expressionWolfgang Huber, Anja von Heydebreck, Holger Sültmann, Annemarie Poustka, Martin Vingron. 96-104
- A variance-stabilizing transformation for gene-expression microarray dataBlythe Durbin, Johanna S. Hardin, Douglas M. Hawkins, David M. Rocke. 105-110
- Binary tree-structured vector quantization approach to clustering and visualizing microarray dataM. Sultan, Dennis A. Wigle, C. A. Cumbaa, M. Maziarz, Janice I. Glasgow, M. S. Tsao, Igor Jurisica. 111-119
- Linking gene expression data with patient survival times using partial least squaresPeter J. Park, Lu Tian, Isaac S. Kohane. 120-127
- Microarray synthesis through multiple-use PCR primer designRohan J. Fernandes, Steven Skiena. 128-135
- Discovering statistically significant biclusters in gene expression dataAmos Tanay, Roded Sharan, Ron Shamir. 136-144
- Co-clustering of biological networks and gene expression dataDaniel Hanisch, Alexander Zien, Ralf Zimmer, Thomas Lengauer. 145-154
- Statistical process control for large scale microarray experimentsFabian Model, Thomas König, Christian Piepenbrock, Péter Adorján. 155-163
- Evaluating machine learning approaches for aiding probe selection for gene-expression arraysJ. B. Tobler, Michael Molla, Emile F. Nuwaysir, R. D. Green, Jude W. Shavlik. 164-171
- The degenerate primer design problemChaim Linhart, Ron Shamir. 172-181
- Splicing graphs and EST assembly problemSteffen Heber, Max A. Alekseyev, Sing-Hoi Sze, Haixu Tang, Pavel A. Pevzner. 181-188
- Exact genetic linkage computations for general pedigreesMaáyan Fishelson, Dan Geiger. 189-198
- Assigning probes into a small number of pools separable by electrophoresisTeemu Kivioja, Mikko Arvas, Kari Kataja, Merja Penttilä, Hans Söderlund, Esko Ukkonen. 199-206
- Representing genetic sequence data for pharmacogenomics: an evolutionary approach using ontological and relational modelsDaniel L. Rubin, Farhad Shafa, Diane E. Oliver, Micheal Hewett, Russ B. Altman. 207-215
- Evaluating functional network inference using simulations of complex biological systemsV. Anne Smith, Erich D. Jarvis, Alexander J. Hartemink. 216-224
- The Pathway Tools softwarePeter D. Karp, Suzanne M. Paley, Pedro Romero. 225-232
- Discovering regulatory and signalling circuits in molecular interaction networksTrey Ideker, Owen Ozier, Benno Schwikowski, Andrew F. Siegel. 233-240
- Modelling regulatory pathways in E. coli from time series expression profilesIrene M. Ong, Jeremy D. Glasner, David Page. 241-248
- Of truth and pathways: chasing bits of information through myriads of articlesMichael Krauthammer, Pauline Kra, Ivan Iossifov, Shawn M. Gomez, George Hripcsak, Vasileios Hatzivassiloglou, Carol Friedman, Andrey Rzhetsky. 249-257
- Minreg: Inferring an active regulator setDana Pe er, Aviv Regev, Amos Tanay. 258-267
- Marginalized kernels for biological sequencesKoji Tsuda, Taishin Kin, Kiyoshi Asai. 268-275
- A tree kernel to analyse phylogenetic profilesJean-Philippe Vert. 276-284
- Statistically based postprocessing of phylogenetic analysis by clusteringCara Stockham, Li-San Wang, Tandy Warnow. 285-293
- Efficiently detecting polymorphisms during the fragment assembly processDaniel P. Fasulo, Aaron L. Halpern, Ian M. Dew, Clark M. Mobarry. 294-302
- Multiple genome rearrangement: a general approach via the evolutionary genome graphDmitry Korkin, Lev Goldfarb. 303-311
- Efficient multiple genome alignmentMichael Höhl, Stefan Kurtz, Enno Ohlebusch. 312-320
- PseudoViewer: automatic visualization of RNA pseudoknotsKyungsook Han, Yujin Lee, Wootaek Kim. 321-328
- A powerful non-homology method for the prediction of operons in prokaryotesGabriel Moreno-Hagelsieb, Julio Collado-Vides. 329-336
- Identifying operons and untranslated regions of transcripts using Escherichia coli RNA expression analysisBrian Tjaden, David R. Haynor, Sergey Stolyar, Carsten Rosenow, Eugene Kolker. 337-344
- Detecting recombination with MCMCDirk Husmeier, Gráinne McGuire. 345-353
- Finding composite regulatory patterns in DNA sequencesEleazar Eskin, Pavel A. Pevzner. 354-363