Abstract is missing.
- A Fast Agglomerative Community Detection Method for Protein Complex Discovery in Protein Interaction NetworksMohammad S. Rahman, Alioune Ngom. 1-12 [doi]
- Inferring Gene Regulatory Networks from Time-Series Expressions Using Random Forests EnsembleD. A. K. Maduranga, Jie Zheng, Piyushkumar A. Mundra, Jagath C. Rajapakse. 13-22 [doi]
- Local Topological Signatures for Network-Based Prediction of Biological FunctionWynand Winterbach, Piet Van Mieghem, Marcel J. T. Reinders, Huijuan Wang, Dick de Ridder. 23-34 [doi]
- Mutational Genomics for Cancer Pathway DiscoveryJeroen de Ridder, Jaap Kool, Anthony Uren, Jan Bot, Johann de Jong, Alistair G. Rust, Anton Berns, Maarten van Lohuizen, David J. Adams, Lodewyk F. A. Wessels, Marcel J. T. Reinders. 35-46 [doi]
- Outlier Gene Set Analysis Combined with Top Scoring Pair Provides Robust Biomarkers of Pathway ActivityMichael F. Ochs, Jason E. Farrar, Michael Considine, Yingying Wei, Soheil Meschinchi, Robert J. Arceci. 47-58 [doi]
- Restricted Neighborhood Search Clustering Revisited: An Evolutionary Computation PerspectiveClara Pizzuti, Simona E. Rombo. 59-68 [doi]
- Class Dependent Feature Weighting and K-Nearest Neighbor ClassificationElena Marchiori. 69-78 [doi]
- Simultaneous Sample and Gene Selection Using T-score and Approximate Support VectorsPiyushkumar A. Mundra, Jagath C. Rajapakse, D. A. K. Maduranga. 79-90 [doi]
- Versatile Sparse Matrix Factorization and Its Applications in High-Dimensional Biological Data AnalysisYifeng Li, Alioune Ngom. 91-101 [doi]
- A Local Structural Prediction Algorithm for RNA Triple Helix StructureBay-Yuan Hsu, Thomas K. F. Wong, Wing-Kai Hon, Xinyi Liu, Tak Wah Lam, Siu-Ming Yiu. 102-113 [doi]
- Combining Protein Fragment Feature-Based Resampling and Local OptimisationTrent Higgs, Lukas Folkman, Bela Stantic. 114-125 [doi]
- Experimental Determination of Intrinsic Drosophila Embryo Coordinates by Evolutionary ComputationAlexander V. Spirov, Carlos E. Vanario-Alonso, Ekaterina N. Spirova, David M. Holloway. 126-137 [doi]
- Identifying Informative Genes for Prediction of Breast Cancer SubtypesIman Rezaeian, Yifeng Li, Martin Crozier, Eran Andrechek, Alioune Ngom, Luis Rueda, Lisa Porter. 138-148 [doi]
- Predicting Therapeutic Targets with Integration of Heterogeneous Data SourcesYan-Fen Dai, Yin-Ying Wang, Xing-Ming Zhao. 149-158 [doi]
- Using Predictive Models to Engineer Biology: A Case Study in Codon OptimizationAlexey A. Gritsenko, Marcel J. T. Reinders, Dick de Ridder. 159-171 [doi]
- Active Learning for Protein Function Prediction in Protein-Protein Interaction NetworksWei Xiong, Luyu Xie, Jihong Guan, Shuigeng Zhou. 172-183 [doi]
- Conditional Random Fields for Protein Function PredictionThies Gehrmann, Marco Loog, Marcel J. T. Reinders, Dick de Ridder. 184-195 [doi]
- Enhancing Protein Fold Prediction Accuracy Using Evolutionary and Structural FeaturesAbdollah Dehzangi, Kuldip K. Paliwal, James G. Lyons, Alok Sharma, Abdul Sattar. 196-207 [doi]
- Exploring Potential Discriminatory Information Embedded in PSSM to Enhance Protein Structural Class Prediction AccuracyAbdollah Dehzangi, Kuldip K. Paliwal, James G. Lyons, Alok Sharma, Abdul Sattar. 208-219 [doi]
- Inferring the Association Network from p53 Sequence Alignment Using Granular EvaluationsDavid K. Y. Chiu, Ramya Manjunath. 220-230 [doi]
- Prediction of Non-genotoxic Hepatocarcinogenicity Using Chemical-Protein InteractionsChun-Wei Tung. 231-241 [doi]
- A Structure Based Algorithm for Improving Motifs PredictionSudipta Pathak, Vamsi Krishna Kundeti, Martin R. Schiller, Sanguthevar Rajasekaran. 242-252 [doi]
- A Workflow for the Prediction of the Effects of Residue Substitution on Protein StabilityRuben Acuña, Zoé Lacroix, Jacques Chomilier. 253-264 [doi]
- Estimating Viral Haplotypes in a Population Using k-mer CountingRaunaq Malhotra, Shruthi Prabhakara, Mary Poss, Raj Acharya. 265-276 [doi]
- Fast Computation of Entropic Profiles for the Detection of Conservation in GenomesMatteo Comin, Morris Antonello. 277-288 [doi]