Abstract is missing.
- Session IntroductionKelly Regan, Zachary B. Abrams, Michael Sharpnack, Arunima Srivastava, Kun Huang, Nigam Shah, Philip R. O. Payne. 1-8 [doi]
- An Integrated Network Approach to Identifying Biological Pathways and Environmental Exposure Interactions in Complex DiseasesChristian Darabos, Jingya Qiu, Jason H. Moore. 9-20 [doi]
- Computing Therapy for Precision Medicine: Collaborative Filtering Integrates and Predicts Multi-entity InteractionsSam Regenbogen, Angela D. Wilkins, Olivier Lichtarge. 21-32 [doi]
- Knowledge-Assisted Approach to Identify Pathways with Differential DependenciesGil Speyer, Jeff Kiefer, Harshil Dhruv, Michael E. Berens, Seungchan Kim. 33-44 [doi]
- Integrating Genetic and Structural Data on Human Protein Kinome in Network-Based Modeling of Kinase Sensitivities and Resistance to Targeted and Personalized Anticancer DrugsGennady M. Verkhivker. 45-56 [doi]
- Phenome-Wide Interaction Study (PheWIS) in Aids Clinical Trials Group Data (ACTG)Shefali S. Verma, Alex T. Frase, Anurag Verma, Sarah A. Pendergrass, Shaun Mahony, David W. Haas, Marylyn D. Ritchie. 57-68 [doi]
- A Framework for Attribute-Based Community Detection with Applications to Integrated Functional GenomicsHan Yu, Rachael Hageman Blair. 69-80 [doi]
- Collective Pairwise Classification for Multi-Way Analysis of Disease and Drug DataMarinka Zitnik, Blaz Zupan. 81-92 [doi]
- Session IntroductionMelissa Haendel, Maricel G. Kann, Nicole L. Washington. 93-95 [doi]
- Testing Population-Specific Quantitative Trait Associations for Clinical Outcome Relevance in a Biorepository Linked to Electronic Health Records: LPA and Myocardial Infarction in African AmericansLogan Dumitrescu, Kirsten E. Diggins, Robert J. Goodloe, Dana C. Crawford. 96-107 [doi]
- Diagnosis-Guided Method for Identifying Multi-Modality Neuroimaging Biomarkers Associated with Genetic Risk Factors in Alzheimer's DiseaseXiaoke Hao, Jingwen Yan, Xiaohui Yao, Shannon L. Risacher, Andrew J. Saykin, Daoqiang Zhang, Li Shen. 108-119 [doi]
- Metabolomics Differential Correlation Network Analysis of OsteoarthritisTing Hu, Weidong Zhang, Zhaozhi Fan, Guang Sun, Sergei Likhodi, Edward Randell, Guangju Zhai. 120-131 [doi]
- Investigating the Importance of Anatomical Homology for Cross-Species Phenotype Comparisons Using Semantic SimilarityPrashanti Manda, Christopher J. Mungall, James P. Balhoff, Hilmar Lapp, Todd J. Vision. 132-143 [doi]
- Discovering Patient Phenotypes Using Generalized Low Rank ModelsAlejandro Schuler, Vincent Liu, Joe Wan, Alison Callahan, Madeleine Udell, David E. Stark, Nigam H. Shah. 144-155 [doi]
- Inference of Personalized Drug Targets via Network PropagationOrtal Shnaps, Eyal Perry, Dana Silverbush, Roded Sharan. 156-167 [doi]
- Integrating Clinical Laboratory Measures and ICD-9 Code Diagnoses in Phenome-Wide Association StudiesAnurag Verma, Joseph B. Leader, Shefali S. Verma, Alex T. Frase, John R. Wallace, Scott M. Dudek, Daniel R. Lavage, Cristopher V. Van Hout, Frederick E. Dewey, John Penn, Alexander E. Lopez, John D. Overton, David J. Carey, David H. Ledbetter, H. Lester Kirchner, Marylyn D. Ritchie, Sarah A. Pendergrass. 168-179 [doi]
- Session IntroductionArjun K. Manrai, Chirag J. Patel, Nils Gehlenborg, Nicholas P. Tatonetti, John P. A. Ioannidis, Isaac S. Kohane. 180-182 [doi]
- Reproducible Research Workflow in R for the Analysis of Personalized Human Microbiome DataBenjamin J. Callahan, Diana Proctor, David A. Relman, Julia Fukuyama, Susan P. Holmes. 183-194 [doi]
- Dynamically Evolving Clinical Practices and Implications for Predicting Medical DecisionsJonathan H. Chen, Mary K. Goldstein, Steven M. Asch, Russ B. Altman. 195-206 [doi]
- Repurposing Germline Exomes of the Cancer Genome Atlas Demands a Cautious Approach and Sample-Specific Variant FilteringAmanda Koire, Panagiotis Katsonis, Olivier Lichtarge. 207-218 [doi]
- Identification of Questionable Exclusion Criteria in Mental Disorder Clinical Trials Using a Medical EncyclopediaHan-dong Mao, Chunhua Weng. 219-230 [doi]
- Reproducible and Shareable Quantifications of PathogenicityArjun K. Manrai, Brice L. Wang, Chirag J. Patel, Isaac S. Kohane. 231-242 [doi]
- Session IntroductionAlexander A. Morgan, Sean D. Mooney, Bruce J. Aronow, Steven E. Brenner. 243-248 [doi]
- Knowledge Driven Binning and PheWAS Analysis in Marshfield Personalized Medicine Research Project Using BioBinAnna Okula Basile, John R. Wallace, Peggy L. Peissig, Catherine A. McCarty, Murray H. Brilliant, Marylyn D. Ritchie. 249-260 [doi]
- Multitask Feature Selection with Task DescriptorsVictor Bellon, Véronique Stoven, Chloé-Agathe Azencott. 261-272 [doi]
- Personalized Hypothesis Tests for Detecting Medication Response in Parkinson Disease Patients Using iPhone Sensor DataElias Chaibub Neto, Brian M. Bot, Thanneer M. Perumal, Larsson Omberg, Justin Guinney, Mike Kellen, Arno Klein, Stephen H. Friend, Andrew Trister. 273-284 [doi]
- Kidney Disease Genetics and the Importance of Diversity in Precision MedicineJessica Cooke Bailey, Sarah Wilson, Kristin Brown-Gentry, Robert J. Goodloe, Dana C. Crawford. 285-296 [doi]
- Predicting Significance of Unknown Variants in Glial Tumors Through Sub-Class EnrichmentAlex M. Fichtenholtz, Nicholas D. Camarda, Eric K. Neumann. 297-308 [doi]
- Do Cancer Clinical Trial Populations Truly Represent Cancer Patients? A Comparison of Open Clinical Trials to the Cancer Genome AtlasNophar Geifman, Atul J. Butte. 309-320 [doi]
- Patient-Specific Data Fusion for Cancer Stratification and Personalised TreatmentVladimir Gligorijevic, Noël Malod-Dognin, Natasa Przulj. 321-332 [doi]
- PRISM: A Data-Driven Platform for Monitoring Mental HealthMaulik R. Kamdar, Michelle J. Wu. 333-344 [doi]
- Bayesian Biclustering for Patient StratificationSahand Khakabimamaghani, Martin Ester. 345-356 [doi]
- Biofilter as a Functional Annotation Pipeline for Common and Rare Copy Number BurdenDokyoon Kim, Anastasia Lucas, Joseph Glessner, Shefali S. Verma, Yukiko Bradford, Ruowang Li, Alex T. Frase, Hakon Hakonarson, Peggy L. Peissig, Murray H. Brilliant, Marylyn D. Ritchie. 357-368 [doi]
- The Challenges in Using Electronic Health Records for Pharmacogenomics and Precision Medicine ResearchSarah M. Laper, Nicole A. Restrepo, Dana C. Crawford. 369-380 [doi]
- Separating the Causes and Consequences in Disease TranscriptomeYong Fuga Li, Fuxiao Xin, Russ B. Altman. 381-392 [doi]
- A Bayesian Nonparametric Model for Reconstructing Tumor Subclones Based on Mutation PairsSubhajit Sengupta, Tianjian Zhou, Peter Müller 0003, Yuan Ji. 393-404 [doi]
- One-Class Detection of Cell States in Tumor SubtypesArtem Sokolov, Evan O. Paull, Joshua M. Stuart. 405-416 [doi]
- RDF Sketch Maps - Knowledge Complexity Reduction for Precision Medicine AnalyticsNattaphon Thanintorn, Juexin Wang, Ilker Ersoy, Zainab Al-Taie, Yuexu Jiang, Duolin Wang, Megha Verma, Trupti Joshi, Richard Hammer, Dong Xu, Dmitriy Shin. 417-428 [doi]
- Session IntroductionDrena Dobbs, Steven E. Brenner, Vasant G. Honavar, Robert L. Jernigan, Alain Laederach, Quaid Morris. 429-432 [doi]
- Cseq-Simulator: A Data Simulator for CLIP-Seq ExperimentsWanja Kassuhn, Uwe Ohler, Philipp Drewe. 433-444 [doi]
- A Motif-Based Method for Predicting Interfacial Residues in Both the RNA and Protein Components of Protein-RNA ComplexesUsha Muppirala, Benjamin A. Lewis, Carla M. Mann, Drena Dobbs. 445-455 [doi]
- Detection of Bacterial Small Transcripts from RNA-Seq Data: A Comparative AssessmentLourdes Peña Castillo, Marc Gruell, Martin E. Mulligan, Andrew S. Lang. 456-467 [doi]
- Session IntroductionMichael J. Paul, Abeed Sarker, John S. Brownstein, Azadeh Nikfarjam, Matthew Scotch, Karen L. Smith, Graciela Gonzalez. 468-479 [doi]
- Text Classification for Automatic Detection of E-Cigarette Use and Use for Smoking Cessation from Twitter: A Feasibility PilotYin Aphinyanaphongs, Armine Lulejian, Duncan Penfold-Brown, Richard Bonneau, Paul Krebs. 480-491 [doi]
- Monitoring Potential Drug Interactions and Reactions via Network Analysis of Instagram User TimelinesRion Brattig Correia, Lang Li, Luis Mateus Rocha. 492-503 [doi]
- Towards Early Discovery of Salient Health Threats: A Social Media Emotion Classification TechniqueBahadorreza Ofoghi, Meghan Mann, Karin Verspoor. 504-515 [doi]
- Predicting Individual Well-Being Through the Language of Social MediaH. Andrew Schwartz, Maarten Sap, Margaret L. Kern, Johannes C. Eichstaedt, Adam Kapelner, Megha Agrawal, Eduardo Blanco 0003, Lukasz Dziurzynski, Gregory J. Park, David Stillwell, Michal Kosinski, Martin E. P. Seligman, Lyle H. Ungar. 516-527 [doi]
- Finding Potentially Unsafe Nutritional Supplements from User Reviews with Topic ModelingRyan Sullivan, Abeed Sarker, Karen O'Connor, Amanda Goodin, Mark Karlsrud, Graciela Gonzalez. 528-539 [doi]
- Insights from Machine-Learned Diet Success PredictionIngmar Weber, Palakorn Achananuparp. 540-551 [doi]
- Translational Bioinformatics 101Jessica D. Tenenbaum, Subha Madhavan, Robert R. Freimuth, Joshua C. Denny, Lewis J. Frey. 552-556 [doi]
- Computational Approaches to Study Microbes and MicrobiomesCasey S. Greene, James A. Foster, Bruce A. Stanton, Deborah A. Hogan, Yana Bromberg. 557-565 [doi]
- Use of Genome Data in Newborns as a Starting Point for Life-Long Precision MedicineSteven E. Brenner, Stephen Kingsmore, Sean D. Mooney, Robert Nussbaum, Jennifer Puck. 568-575 [doi]
- Workshop on Topology and Abstract Algebra for BiomedicineEric K. Neumann, Svetlana Lockwood, Bala Krishnamoorthy, David Spivak. 576-580 [doi]
- Social Media Mining Shared Task WorkshopAbeed Sarker, Azadeh Nikfarjam, Graciela Gonzalez. 581-592 [doi]