Table of Contents

• Dataflow coordination of data-parallel tasks via MPI 3.0Justin M. Wozniak, Tom Peterka, Timothy G. Armstrong, James Dinan, Ewing L. Lusk, Michael Wilde, Ian T. Foster. 1-6 [doi]
• Improving MPI applications with a new MPI_Info and the use of the memoizationAlejandro Calderón, Jesús Carretero, Félix García Carballeira, Javier Fernández, Daniel Higuero, Borja Bergua. 7-12 [doi]
• Enabling MPI interoperability through flexible communication endpointsJames Dinan, Pavan Balaji, David Goodell, Douglas Miller, Marc Snir, Rajeev Thakur. 13-18 [doi]
• MPI datatype processing using runtime compilationTimo Schneider, Fredrik Kjolstad, Torsten Hoefler. 19-24 [doi]
• McMPI: a managed-code MPI library in pure C#Daniel Holmes, Stephen Booth. 25-30 [doi]
• Optimized process placement for collective I/O operationsVishwanath Venkatesan, Rakhi Anand, Jaspal Subhlok, Edgar Gabriel. 31-36 [doi]
• Improving collective I/O performance by pipelining request aggregation and file accessSaba Sehrish, Seung Woo Son, Wei-keng Liao, Alok N. Choudhary, Karen Schuchardt. 37-42 [doi]
• Using MPI in high-performance computing servicesJudicael A. Zounmevo, Dries Kimpe, Robert B. Ross, Ahmad Afsahi. 43-48 [doi]
• DRASync: distributed region-based memory allocation and synchronizationChristi Symeonidou, Polyvios Pratikakis, Angelos Bilas, Dimitrios S. Nikolopoulos. 49-54 [doi]
• Design, implementation, and performance evaluation of MPI 3.0 on portals 4.0Amin Hassani, Anthony Skjellum, Ron Brightwell, Brian W. Barrett. 55-60 [doi]
• Analysis of topology-dependent MPI performance on Gemini networksAntonio J. Peña, Ralf G. Correa Carvalho, James Dinan, Pavan Balaji, Rajeev Thakur, William Gropp. 61-66 [doi]
• The impact of hybrid-core processors on MPI message rateBrian W. Barrett, Simon D. Hammond, Ron Brightwell, K. Scott Hemmert. 67-71 [doi]
• Understanding the formation of wait states in applications with one-sided communicationMarc-André Hermanns, Manfred Miklosch, David Böhme, Felix Wolf. 73-78 [doi]
• Optimization of MPI persistent communicationMasayuki Hatanaka, Atsushi Hori, Yutaka Ishikawa. 79-84 [doi]
• Revisiting rendezvous protocols in the context of RDMA-capable host channel adapters and many-core processorsMasamichi Takagi, Yuichi Nakamura, Atsushi Hori, Balazs Gerofi, Yutaka Ishikawa. 85-90 [doi]
• Efficient and truly passive MPI-3 RMA using InfiniBand atomicsMingzhe Li, Sreeram Potluri, Khaled Hamidouche, Jithin Jose, Dhabaleswar K. Panda. 91-96 [doi]
• Optimization of MPI_Allreduce on the blue Gene/Q supercomputerSameer Kumar 0001, Daniel Faraj. 97-103 [doi]
• In-place algorithms for the symmetric all-to-all exchange with MPIMichael Hofmann, Gudula Rünger. 105-110 [doi]
• Energy estimation for MPI broadcasting algorithms in large scale HPC systemsMohammed el Mehdi Diouri, Olivier Glück, Jean-Christophe Mignot, Laurent Lefèvre. 111-116 [doi]
• Combining static and dynamic validation of MPI collective communicationsEmmanuelle Saillard, Patrick Carribault, Denis Barthou. 117-122 [doi]
• Runtime message uniquification for accurate communication analysis on incomplete MPI event tracesMichael Wagner, Jens Doleschal, Wolfgang E. Nagel, Andreas Knüpfer. 123-128 [doi]
• Runtime MPI collective checking with tree-based overlay networksTobias Hilbrich, Bronis R. de Supinski, Fabian Hänsel, Matthias S. Müller, Martin Schulz, Wolfgang E. Nagel. 129-134 [doi]
• Parallel bucket-brigade communication interface for scientific applicationsDaiki Fukudome, Toshiya Takami. 135-136 [doi]
• First observations using nonblocking collectives in MVAPICHHubert Ritzdorf. 137-138 [doi]
• A hierarchical parallel storage system based on distributed memory for large scale systemsFrancisco Rodrigo Duro, Javier García Blas, Jesús Carretero. 139-140 [doi]
• Towards the availability of Java bindings in open MPIOscar Vega-Gisbert, Jose E. Roman, Siegmar Groß, Jeffrey M. Squyres. 141-142 [doi]
• On the performance of concurrent transfers in collective algorithmsJuan-Antonio Rico-Gallego, Juan Carlos Díaz Martín. 143-144 [doi]
• Methodology for MPI applications autotuningAntonio Pimenta, Eduardo César, Anna Sikora. 145-146 [doi]
• A communication library between multiple sets of MPI processes for a MPMD modelTakenori Shimosaka, Hitoshi Murai, Mitsuhisa Sato. 147-148 [doi]
• Dynamic memory usage analysis of MPI libraries using DMATP-MPIShinji Sumimoto, Takayuki Okamoto, Hideyuki Akimoto, Tomoya Adachi, Yuichiro Ajima, Kenichi Miura. 149-150 [doi]
• Run-time creation of the turbulent channel flow database by an HPC simulation using MPI-DBJason Graham, Edward Givelberg, Kalin Kanov. 151-156 [doi]
• A fluid-structure-interaction tool by coupling of existing codesPablo Mosquera Michaelsen, Balázs Pritz, Martin Gabi. 157-162 [doi]
• Advancing application process affinity experimentation: open MPI's LAMA-based affinity interfaceJoshua Hursey, Jeffrey M. Squyres. 163-168 [doi]
• Multi-parallel prefiltering on the convey HC-1 for supporting homology detectionFabian Nowak, Michael Bromberger, Martin Schindewolf, Wolfgang Karl. 169-174 [doi]
• Non-negative matrix factorization on low-power architectures: a comparative studyCarlos García, Francisco D. Igual, Guillermo Botella, Manuel Prieto, Francisco Tirado. 175-178 [doi]
• Triangulating molecular surfaces on multiple GPUsSérgio Dias, Abel J. P. Gomes. 181-186 [doi]
• A GPU approach for accelerating 3D deformable registration (DARTEL) on brain biomedical imagesPedro Valero-Lara. 187-192 [doi]
• Parallelizing a multiobjective swarm intelligence approach to phylogenetics using hybrid MPI/OpenMP schemesSergio Santander-Jiménez, Miguel A. Vega-Rodríguez. 193-198 [doi]
• Entire motifs search of secondary structures in proteins: a parallelization studyMarco Ferretti, Mirto Musci. 199-204 [doi]
• Parallel algorithm for simulating the spatial transmission of influenza in EpiGraphGonzalo Martín, David E. Singh, Maria-Cristina Marinescu, Jesús Carretero. 205-210 [doi]
• Efficient parallel construction of suffix trees for genomes larger than main memoryMatteo Comin, Montse Farreras. 211-216 [doi]
• Parallel implementation of a X-ray tomography reconstruction algorithm based on MPI and CUDAFrancisco Javier García Blas, Florin Isaila, Mónica Abella, Jesús Carretero, Ernesto Liria, Manuel Desco. 217-222 [doi]
• Parallelizing a hybrid multiobjective differential evolution for identifying cis-regulatory elementsDavid L. González-Álvarez, Miguel A. Vega-Rodríguez. 223-228 [doi]
• Algorithms for large-scale whole genome association analysisElmar Peise, Diego Fabregat-Traver, Yurii S. Aulchenko, Paolo Bientinesi. 229-234 [doi]
• A dynamic pipeline for RNA sequencing on multicore processorsHéctor Martínez, Joaquín Tárraga, Ignacio Medina, Sergio Barrachina, Maribel Castillo, Joaquín Dopazo, Enrique S. Quintana-Ortí. 235-240 [doi]
• Parallel efficient aligner of pyrosequencing readsMiguel E. Coimbra, Francisco Fernandes, Luís M. S. Russo, Ana T. Freitas. 241-246 [doi]
• P-Biblio-MetReS, a parallel data mining tool for the reconstruction of molecular networksIvan Teixido, Anabel Usie, Josep L. Lérida, Francesc Solsona, Jorge Comas, Nestor Torres, Hiren Karathia, Rui Alves. 247-252 [doi]
• Parallel strategies for an inverse docking methodRomain Vasseur, Stéphanie Baud, Luiz Angelo Steffenel, Xavier Vigouroux, Laurent Martiny, Michaël Krajecki, Manuel Dauchez. 253-258 [doi]
• Scalability and accuracy improvements of consistency-based multiple sequence alignment toolsMiquel Orobitg, Jordi Lladós, Fernando Guirado, Fernando Cores, Cédric Notredame. 259-264 [doi]
• A data decomposition middleware tool with a generic built-in work-flowAhmad Salah, Kenli Li. 265-269 [doi]
• Job scheduling for optimizing data locality in Hadoop clustersAprigio Bezerra, Porfidio Hernández, Antonio Espinosa, Juan Carlos Moure. 271-276 [doi]
• Seamless coarse grained parallelism integration in intensive bioinformatics workflowsFrancois Moreews, Dominique Lavenier. 277-282 [doi]