Abstract is missing.
- The Second Decade of the International Conference on Research in Computational Molecular Biology (RECOMB)Farhad Hormozdiari, Fereydoun Hormozdiari, Carl Kingsford, Paul Medvedev, Fabio Vandin. 3-16 [doi]
- A MAD-Bayes Algorithm for State-Space Inference and Clustering with Application to Querying Large Collections of ChIP-Seq Data SetsChandler Zuo, Kailei Chen, Sündüz Keles. 19-36 [doi]
- Accurate Recovery of Ribosome Positions Reveals Slow Translation of Wobble-Pairing Codons in YeastHao Wang, Joel McManus, Carl Kingsford. 37-52 [doi]
- Multitask Matrix Completion for Learning Protein Interactions Across DiseasesMeghana Kshirsagar, Jaime G. Carbonell, Judith Klein-Seetharaman, Keerthiram Murugesan. 53-64 [doi]
- pathTiMEx: Joint Inference of Mutually Exclusive Cancer Pathways and Their Dependencies in Tumor ProgressionSimona Cristea, Jack Kuipers, Niko Beerenwinkel. 65-82 [doi]
- Clonality Inference from Single Tumor Samples Using Low Coverage Sequence DataNilgun Donmez, Salem Malikic, Alexander W. Wyatt, Martin E. Gleave, Colin Collins, Süleyman Cenk Sahinalp. 83-94 [doi]
- Flexible Modelling of Genetic Effects on Function-Valued TraitsNicoló Fusi, Jennifer Listgarten. 95-110 [doi]
- MetaFlow: Metagenomic Profiling Based on Whole-Genome Coverage Analysis with Min-Cost FlowsAhmed Sobih, Alexandru I. Tomescu, Veli Mäkinen. 111-121 [doi]
- LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid-rotamer-like EfficiencyMark A. Hallen, Jonathan D. Jou, Bruce Randall Donald. 122-136 [doi]
- Improving Bloom Filter Performance on Sequence Data Using k -mer Bloom FiltersDavid Pellow, Darya Filippova, Carl Kingsford. 137-151 [doi]
- Safe and Complete Contig Assembly Via OmnitigsAlexandru I. Tomescu, Paul Medvedev. 152-163 [doi]
- Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant VariantsAlexander Artyomenko, Nicholas C. Wu, Serghei Mangul, Eleazar Eskin, Ren Sun, Alex Zelikovsky. 164-175 [doi]
- Structural Variation Detection with Read Pair Information - An Improved Null-Hypothesis Reduces BiasKristoffer Sahlin, Mattias Frånberg, Lars Arvestad. 176-188 [doi]
- On Computing Breakpoint Distances for Genomes with Duplicate GenesMingfu Shao, Bernard M. E. Moret. 189-203 [doi]
- New Genome Similarity Measures Based on Conserved Gene AdjacenciesLuis Antonio Brasil Kowada, Daniel Doerr, Simone Dantas, Jens Stoye. 204-224 [doi]
- Fast Phylogenetic Biodiversity Computations Under a Non-uniform Random DistributionConstantinos Tsirogiannis, Brody Sandel. 225-236 [doi]
- SLICER: Inferring Branched, Nonlinear Cellular Trajectories from Single Cell RNA-seq DataJoshua D. Welch, Ziqing Liu, Li Wang, Junjie Lu, Paul Lerou, Jeremy E. Purvis, Li Qian, Alexander J. Hartemink, Jan F. Prins. 239-240 [doi]
- Multi-track Modeling for Genome-Scale Reconstruction of 3D Chromatin Structure from Hi-C DataChenchen Zou, Yuping Zhang, Zhengqing Ouyang. 241 [doi]
- Revealing the Genetic Basis of Immune Traits in the Absence of Experimental ImmunophenotypingYael Steuerman, Irit Gat-Viks. 242-243 [doi]
- Shall We Dense? Comparing Design Strategies for Time Series Expression ExperimentsEmre Sefer, Ziv Bar-Joseph. 244-245 [doi]
- Enabling Privacy Preserving GWAS in Heterogeneous Human PopulationsSean Simmons 0001, Cenk S. Sahinalp, Bonnie Berger. 246-247 [doi]
- Efficient Privacy-Preserving Read Mapping Using Locality Sensitive Hashing and Secure Kmer VotingVictoria Popic, Serafim Batzoglou. 248-249 [doi]
- Finding Mutated Subnetworks Associated with Survival in CancerTommy Hansen, Fabio Vandin. 250 [doi]
- Multi-state Perfect Phylogeny Mixture Deconvolution and Applications to Cancer SequencingMohammed El-Kebir, Gryte Satas, Layla Oesper, Benjamin J. Raphael. 251 [doi]
- Tree Inference for Single-Cell DataKatharina Jahn, Jack Kuipers, Niko Beerenwinkel. 252 [doi]
- mLDM: A New Hierarchical Bayesian Statistical Model for Sparse Microbial Association DiscoveryYuQing Yang, Ning Chen, Ting Chen 0006. 253-254 [doi]
- Low-Density Locality-Sensitive Hashing Boosts Metagenomic BinningYunan Luo, Jianyang Zeng, Bonnie Berger, Jian Peng 0001. 255-257 [doi]
- metaSPAdes: A New Versatile de novo Metagenomics AssemblerSergey Nurk, Dmitry Meleshko, Anton Korobeynikov, Pavel A. Pevzner. 258 [doi]
- Distributed Gradient Descent in Bacterial Food SearchShashank Singh 0005, Sabrina Rashid, Saket Navlakha, Ziv Bar-Joseph. 259-260 [doi]
- AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering Selection Trends in HT-SELEX ExperimentsPhuong Dao, Jan Hoinka, Yijie Wang, Mayumi Takahashi, Jiehua Zhou, Fabrizio Costa, John Rossi, John Burnett, Rolf Backofen, Teresa M. Przytycka. 261-262 [doi]
- Fast Bayesian Inference of Copy Number Variants Using Hidden Markov Models with Wavelet CompressionJohn Wiedenhoeft, Eric Brugel, Alexander Schliep. 263 [doi]
- Allele-Specific Quantification of Structural Variations in Cancer GenomesYang Li, Shiguo Zhou, David C. Schwartz, Jian Ma 0004. 264 [doi]
- Assembly of Long Error-Prone Reads Using de Bruijn GraphsYu Lin, Max W. Shen, Jeffrey Yuan, Mark Chaisson, Pavel A. Pevzner. 265 [doi]
- Locating a Tree in a Reticulation-Visible Network in Cubic TimeAndreas D. M. Gunawan, Bhaskar DasGupta, Louxin Zhang. 266 [doi]
- Joint Alignment of Multiple Protein-Protein Interaction Networks via Convex OptimizationSomaye Hashemifar, Qixing Huang, Jinbo Xu. 267-269 [doi]
- Complexes Detection in Biological Networks via Diversified Dense Subgraphs MiningXiuli Ma, Guangyu Zhou, Jingjing Wang, Jian Peng 0001, Jiawei Han 0001. 270-272 [doi]