Table of Contents

• LifeSKIM: Application for Large Scale Biomedical Semantic AnnotationsVassil Momtchev, Georgi Georgiev, Deyan Peychev. [doi]
• The DC-THERA Directory: A Knowledge Management System to Support Collaboration on Dendritic Cell and Immunology ResearchMichaela Gündel, Ciro Scognamiglio, Marco Brandizi, Andrea Splendiani. [doi]
• Semantic Data Integration for Francisella tularensis novicida Proteomic and Genomic DataNadia Anwar, Ela Hunt, Walter Kolch, Andrew Pitt. [doi]
• Knowledge Representation for Web NavigationSimon Jupp, Robert Stevens, Sean Bechhofer, Yeliz Yesilada, Patty Kostkova. [doi]
• Goal-Oriented Task Composition for BioinformaticsKaren Sutherland, Albert Burger. [doi]
• LifeDB: An Autonomous System for Semantic Integration of Life Science Data on Hidden WebAnupam Bhattacharjee, Aminul Islam, Mohammad Shafkat Amin, Shahriyar Hossain, Shazzad Hosain, Hasan Jamil. [doi]
• Penta and Hexa Statements are Suitable for Representing Omics Knowledge on the Semantic WebNorio Kobayashi, Tetsuro Toyoda. [doi]
• Preface [doi]
• A Secure Data Repository Integrating Huge Volumes of Digital Contents as a Semantic WebNorio Kobayashi, Yuko Makita, Eli Kaminuma, Shuji Kawaguchi, Yuko Yoshida, Yoshiki Mochizuki, Akihiro Matsushima, Manabu Ishii, Ryo Umetsu, Satomi Asano, Naohiko Heida, Tetsuya Sakurai, Takashi Kuromori, Kazuo Shinozaki, Tetsuro Toyoda. [doi]
• Knowledge Translation: Computing the Query Potential of Bio-ontologiesWee Tiong Ang, Rajaraman Kanagasabai, Christopher J. O. Baker. [doi]
• BioGateway: Integrated RDF for Life Science QueriesErick Antezana, Ward Blondé, Mikel Egaña, Alistair Rutherford, Robert Stevens, Bernard De Baets, Vladimir Mironov, Martin Kuiper. [doi]
• A User-Centred Evaluation Framework for the SeaLife Semantic Web BrowsersGayo Diallo, Gemma Madle, Gawesh Jawaheer, Patty Kostkova, Dimitra Alexopoulou, Robert Stevens, Simon Jupp, Khaled Khelif. [doi]
• The Generation Challenge Programme Model Driven Architecture: Scientific Domain Model and OntologyGenevieve Mae Aquino, Jeffrey Detras, Rosemary Shrestha, Martin Senger, Kevin Manansala, Elizabeth Arnaud, Reinhard Simon, Jayashree Balaiji, Thomas Hazekamp, Guy Davenport, Graham McLaren, Theo van Hintum, Richard M. Bruskiewich. [doi]
• PathExplorer: Service Mining for Biological Pathways on the WebGeorge Zheng, Athman Bouguettaya. [doi]
• Structuring the Life Science Resourceome for Semantic Systems Biology: Lessons from the BioGateway ProjectErick Antezana, Ward Blondé, Mikel Egaña, Alistair Rutherford, Robert Stevens, Bernard De Baets, Vladimir Mironov, Martin Kuiper. [doi]
• The Cell Cycle Ontology: An Application Ontology Supporting the Life SciencesErick Antezana, Mikel Egaña, Ward Blondé, Robert Stevens, Bernard De Baets, Vladimir Mironov, Martin Kuiper. [doi]
• An Integrated Ontological Knowledge Base About Orthologous Genes and ProteinsJosé Antonio Miñarro-Giménez, Marisa Madrid, Jesualdo Tomás Fernández-Breis. [doi]
• Structuring Mined Knowledge for the Support of Hypothesis Generation in Molecular BiologyMarco Roos, M. Scott Marshall, Andrew P. Gibson, Pieter W. Adriaans. [doi]
• The ChEBI Ontology: An Ontology for Chemistry within a Biological ContextJanna Hastings, Kirill Degtyarenko, Paula de Matos, Marcus Ennis, Christoph Steinbeck. [doi]
• Supporting Process Development in Bio-jETI by Model Checking and SynthesisAnna-Lena Lamprecht, Tiziana Margaria, Bernhard Steffen. [doi]
• GoWeb: A Semantic Search Engine for the Life Science WebHeiko Dietze, Michael Schroeder. [doi]
• Knowledge Management Using WikipediaDongeun Sun, Seongbin Park, Hyosook Jung. [doi]
• Use of Shared Lexical Resources for Efficient Ontological EngineeringAntonio Jimeno-Yepes, Ernesto Jiménez-Ruiz, Rafael Berlanga Llavori, Dietrich Rebholz-Schuhmann. [doi]
• KASBi: Knowledge-Based Analysis in Systems BiologyMaría del Mar Roldán García, Ismael Navas Delgado, Amine Kerzazi, Othmane Chniber, Joaquin J. Molina-Castro, José Francisco Aldana Montes. [doi]
• Close Integration of ML and NLP Tools in BioAlvis for Semantic Search in BacteriologyRobert Bossy, Alain Kotoujansky, Sophie Aubin, Claire Nedellec. [doi]
• Bio-informatics Reactivity Features Through the Semantic WebTiago Franco, José Júlio Alferes, Ludwig Krippahl, Ricardo Amador. [doi]