Abstract is missing.
- Automated Segmentation of DNA Sequences with Complex Evolutionary HistoriesBrona Brejová, Michal Burger, Tomás Vinar. 1-13 [doi]
- Towards a Practical O(n logn) Phylogeny AlgorithmDaniel G. Brown 0001, Jakub Truszkowski. 14-25 [doi]
- A Mathematical Programming Approach to Marker-Assisted Gene PyramidingStefan Canzar, Mohammed El-Kebir. 26-38 [doi]
- Localized Genome Assembly from Reads to Scaffolds: Practical Traversal of the Paired String GraphRayan Chikhi, Dominique Lavenier. 39-48 [doi]
- Stochastic Errors vs. Modeling Errors in Distance Based Phylogenetic Reconstructions - (Extended Abstract)Daniel Doerr, Ilan Gronau, Shlomo Moran, Irad Yavneh. 49-60 [doi]
- Constructing Large Conservative SupertreesJianrong Dong, David Fernández-Baca. 61-72 [doi]
- PepCrawler: A Fast RRT-Like Algorithm for High-Resolution Refinement and Binding-Affinity Estimation of Peptide Inhibitors - (Abstract)Elad Donsky, Haim J. Wolfson. 73-75 [doi]
- Removing Noise from Gene TreesAndrea Doroftei, Nadia El-Mabrouk. 76-91 [doi]
- Boosting Binding Sites Prediction Using Gene's PositionsMohamed Elati, Rim Fekih, Rémy Nicolle, Ivan Junier, Joan Hérisson, François Képès. 92-103 [doi]
- Constructing Perfect Phylogenies and Proper Triangulations for Three-State CharactersRob Gysel, Fumei Lam, Dan Gusfield. 104-115 [doi]
- On a Conjecture about Compatibility of Multi-states CharactersMichel Habib, Thu-Hien To. 116-127 [doi]
- Learning Protein Functions from Bi-relational Graph of Proteins and Function AnnotationsJonathan Qiang Jiang. 128-138 [doi]
- Graph-Based Decomposition of Biochemical Reaction Networks into Monotone SubsystemsHans-Michael Kaltenbach, Simona Constantinescu, Justin Feigelman, Jörg Stelling. 139-150 [doi]
- Seed-Set Construction by Equi-entropy Partitioning for Efficient and Sensitive Short-Read MappingKouichi Kimura, Asako Koike, Kenta Nakai. 151-162 [doi]
- A Practical Algorithm for Ancestral Rearrangement ReconstructionJakub Kovác, Brona Brejová, Tomás Vinar. 163-174 [doi]
- Bootstrapping Phylogenies Inferred from Rearrangement DataYu Lin, Vaibhav Rajan, Bernard M. E. Moret. 175-187 [doi]
- Speeding Up Bayesian HMM by the Four Russians MethodMd Pavel Mahmud, Alexander Schliep. 188-200 [doi]
- Using Dominances for Solving the Protein Family Identification ProblemNoël Malod-Dognin, Mathilde Le Boudic-Jamin, Pritish Kamath, Rumen Andonov. 201-212 [doi]
- Maximum Likelihood Estimation of Incomplete Genomic Spectrum from HTS DataSerghei Mangul, Irina Astrovskaya, Marius Nicolae, Bassam Tork, Ion I. Mandoiu, Alexander Zelikovsky. 213-224 [doi]
- Algorithm for Identification of Piecewise Smooth Hybrid Systems: Application to Eukaryotic Cell Cycle RegulationVincent Noel, Sergei Vakulenko, Ovidiu Radulescu. 225-236 [doi]
- Parsimonious Reconstruction of Network EvolutionRobert Patro, Emre Sefer, Justin Malin, Guillaume Marçais, Saket Navlakha, Carl Kingsford. 237-249 [doi]
- A Combinatorial Framework for Designing (Pseudoknotted) RNA AlgorithmsYann Ponty, Cédric Saule. 250-269 [doi]
- Indexing Finite Language Representation of Population GenotypesJouni Sirén, Niko Välimäki, Veli Mäkinen. 270-281 [doi]
- Efficiently Solvable Perfect Phylogeny Problems on Binary and k-State Data with Missing ValuesKristian Stevens, Bonnie Kirkpatrick. 282-297 [doi]
- Separating Metagenomic Short Reads into Genomes via Clustering - (Extended Abstract)Olga Tanaseichuk, James Borneman, Tao Jiang. 298-313 [doi]
- Finding Driver Pathways in Cancer: Models and AlgorithmsFabio Vandin, Eli Upfal, Benjamin J. Raphael. 314-325 [doi]
- Clustering with Overlap for Genetic Interaction Networks via Local Search OptimizationJoseph Andrew Whitney, Judice L. Y. Koh, Michael Costanzo, Grant Brown, Charles Boone, Michael Brudno. 326-338 [doi]
- Dynamic Programming Algorithms for Efficiently Computing Cosegmentations between Biological ImagesHang Xiao, Melvin Zhang, Axel Mosig, Hon Wai Leong. 339-350 [doi]
- GASTS: Parsimony Scoring under RearrangementsAndrew Wei Xu, Bernard M. E. Moret. 351-363 [doi]
- OMG! Orthologs in Multiple Genomes - Competing Graph-Theoretical FormulationsChunfang Zheng, Krister M. Swenson, Eric Lyons, David Sankoff. 364-375 [doi]