Abstract is missing.
- Preserving Inversion Phylogeny ReconstructionMatthias Bernt, Kun-Mao Chao, Jyun-Wei Kao, Martin Middendorf, Eric Tannier. 1-13 [doi]
- Fast Phylogenetic Tree Reconstruction Using Locality-Sensitive HashingDaniel Gregory Brown, Jakub Truszkowski. 14-29 [doi]
- Efficient Computation of Popular Phylogenetic Tree MeasuresConstantinos Tsirogiannis, Brody Sandel, Dimitris Cheliotis. 30-43 [doi]
- SibJoin: A Fast Heuristic for Half-Sibling ReconstructionDaniel Gregory Brown, Daniel Dexter. 44-56 [doi]
- Reconstructing the Evolution of Molecular Interaction Networks under the DMC and Link Dynamics ModelsYun Zhu, Luay Nakhleh. 57-68 [doi]
- Estimating Population Size via Line Graph ReconstructionBjarni V. Halldórsson, Dima Blokh, Roded Sharan. 69-80 [doi]
- Extracting Conflict-Free Information from Multi-labeled TreesAkshay Deepak, David Fernández-Baca, Michelle M. McMahon. 81-92 [doi]
- Reducing Problems in Unrooted Tree Compatibility to Restricted Triangulations of Intersection GraphsRob Gysel, Kristian Stevens, Dan Gusfield. 93-105 [doi]
- An Optimal Reconciliation Algorithm for Gene Trees with PolytomiesManuel Lafond, Krister M. Swenson, Nadia El-Mabrouk. 106-122 [doi]
- Accounting for Gene Tree Uncertainties Improves Gene Trees and Reconciliation InferenceThi Hau Nguyen, Jean-Philippe Doyon, Stéphanie Pointet, Anne-Muriel Arigon Chifolleau, Vincent Ranwez, Vincent Berry. 123-134 [doi]
- RNA Tree Comparisons via Unrooted Unordered AlignmentsNimrod Milo, Shay Zakov, Erez Katzenelson, Eitan Bachmat, Yefim Dinitz, Michal Ziv-Ukelson. 135-148 [doi]
- Tree Decomposition and Parameterized Algorithms for RNA Structure-Sequence Alignment Including Tertiary Interactions and Pseudoknots - (Extended Abstract)Philippe Rinaudo, Yann Ponty, Dominique Barth, Alain Denise. 149-164 [doi]
- δ-TRIMAX: Extracting Triclusters and Analysing Coregulation in Time Series Gene Expression DataAnirban Bhar, Martin Haubrock, Anirban Mukhopadhyay 0001, Ujjwal Maulik, Sanghamitra Bandyopadhyay, Edgar Wingender. 165-177 [doi]
- CLIIQ: Accurate Comparative Detection and Quantification of Expressed Isoforms in a PopulationYen-Yi Lin, Phuong Dao, Faraz Hach, Marzieh Bakhshi, Fan Mo, Anna Lapuk, Colin Collins, Süleyman Cenk Sahinalp. 178-189 [doi]
- Improved Lower Bounds on the Compatibility of Quartets, Triplets, and Multi-state CharactersBrad Shutters, Sudheer Vakati, David Fernández-Baca. 190-200 [doi]
- Succinct Multibit Tree: Compact Representation of Multibit Trees by Using Succinct Data Structures in Chemical Fingerprint SearchesYasuo Tabei. 201-213 [doi]
- Comparing DNA Sequence Collections by Direct Comparison of Compressed Text IndexesAnthony J. Cox, Tobias Jakobi, Giovanna Rosone, Ole Schulz-Trieglaff. 214-224 [doi]
- Succinct de Bruijn GraphsAlexander Bowe, Taku Onodera, Kunihiko Sadakane, Tetsuo Shibuya. 225-235 [doi]
- Space-Efficient and Exact de Bruijn Graph Representation Based on a Bloom FilterRayan Chikhi, Guillaume Rizk. 236-248 [doi]
- From de Bruijn Graphs to Rectangle Graphs for Genome AssemblyNikolay Vyahhi, Alex Pyshkin, Son K. Pham, Pavel A. Pevzner. 249-261 [doi]
- MORPH-PRO: A Novel Algorithm and Web Server for Protein MorphingNatalie Castellana, Andrey Lushnikov, Piotr Rotkiewicz, Natasha Sefcovic, Pavel A. Pevzner, Adam Godzik, Kira Vyatkina. 262-273 [doi]
- How Accurately Can We Model Protein Structures with Dihedral Angles?Xuefeng Cui, Shuai Cheng Li, Dongbo Bu, Babak Alipanahi Ramandi, Ming Li. 274-287 [doi]
- Resolving Spatial Inconsistencies in Chromosome Conformation DataGeet Duggal, Robert Patro, Emre Sefer, Hao Wang, Darya Filippova, Samir Khuller, Carl Kingsford. 288-300 [doi]
- MS-DPR: An Algorithm for Computing Statistical Significance of Spectral Identifications of Non-linear PeptidesHosein Mohimani, Sangtae Kim, Pavel A. Pevzner. 301-313 [doi]
- FinIS: Improved in silico Finishing Using an Exact Quadratic Programming FormulationSong Gao, Denis Bertrand, Niranjan Nagarajan. 314-325 [doi]
- Lightweight LCP Construction for Next-Generation Sequencing DatasetsMarkus J. Bauer, Anthony J. Cox, Giovanna Rosone, Marinella Sciortino. 326-337 [doi]
- Sign Assignment Problems on Protein NetworksShay Houri, Roded Sharan. 338-345 [doi]
- Sparse Learning Based Linear Coherent Bi-clusteringYi Shi, Xiaoping Liao, Xinhua Zhang, Guohui Lin, Dale Schuurmans. 346-364 [doi]
- A Simplified View of DCJ-Indel DistancePhillip E. C. Compeau. 365-377 [doi]
- DCJ-indel Distance with Distinct Operation CostsPoly H. da Silva, Marília D. V. Braga, Raphael Machado, Simone Dantas. 378-390 [doi]
- Hidden Breakpoints in Genome AlignmentsBirte Kehr, Knut Reinert, Aaron E. Darling. 391-403 [doi]
- A Probabilistic Approach to Accurate Abundance-Based Binning of Metagenomic ReadsOlga Tanaseichuk, James Borneman, Tao Jiang. 404-416 [doi]
- Tandem Halving Problems by DCJAntoine Thomas, Aïda Ouangraoua, Jean-Stéphane Varré. 417-429 [doi]
- A Practical Approximation Algorithm for Solving Massive Instances of Hybridization NumberLeo van Iersel, Steven Kelk, Nela Lekic, Celine Scornavacca. 430-440 [doi]
- Distributed String Mining for High-Throughput Sequencing DataNiko Välimäki, Simon J. Puglisi. 441-452 [doi]